Definition Jannaschia sp. CCS1 chromosome, complete genome.
Accession NC_007802
Length 4,317,977

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The map label for this gene is 89053234

Identifier: 89053234

GI number: 89053234

Start: 712406

End: 712972

Strand: Reverse

Name: 89053234

Synonym: Jann_0743

Alternate gene names: NA

Gene position: 712972-712406 (Counterclockwise)

Preceding gene: 89053235

Following gene: 89053233

Centisome position: 16.51

GC content: 56.97

Gene sequence:

>567_bases
TTGGACTTTCGCCGCTCTCGCTGGATTCCTCTGGGCAGCACCCCTTGCCTACCTCGTTTGGCAGGGTCTGGATTATGGCG
GCAGTTTTCTGGGCATAGTAGTGGTGGCGATGTTTTTCCTCGTGATGCCATCCTTTGGTCTAGGCGTCGGCGTCATTGCT
ATCCTGCTCGACACGCTATCTGCGCGTGTATGGCGCCCATTGGCAATCGTACCGGGATGCCTGCTCTGCGGTTTAATCTT
TTTTGGCGCAGGACGGGCGTTAACTTTGATTTAGGCGCCCATAGCGAGCACGATCTAAAGCTCAGCCTACCCCTTGATAC
ACAGCCCCGCGCCGCATATACGCCACTTGTTCGCGGTTGGAATCAGCCTGTGGACCTTGGTGCTATGGGTGATCCGCGAA
GTTTCGGCGCGGGCAACAGCCTCGGCACCACCCAGCGAATGAAGCATGCGCCACCTCTGGCGGGCACCTTGCTGCGAGGC
AAGCTGGACCCGGTCGAAAATCAGAGCTCTAGGGCAGACGAAAAATCAAGCGGTCAAACCGCAGCATATAAGGAGCGTTT
CAGATGA

Upstream 100 bases:

>100_bases
TGATGGAACCCCCAAACCTTCTCACCATGTTAAGTGTTGCCTCATCACTTCCGCTATCAATCTGCCTCTTTGCATTCAAT
AAGAGGTACCCTCGGTTAGC

Downstream 100 bases:

>100_bases
ACCTGATCGCACAATTGGAAGCCGAGCAAGTCGAAGCACTTGCCAAGGACATTCCGGATTTCAAGGCGGGCGACACCGTT
CGCGTCGGCTTCCGGGTGAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MDFRRSRWIPLGSTPCLPRLAGSGLWRQFSGHSSGGDVFPRDAILWSRRRRHCYPARHAICACMAPIGNRTGMPALRFNL
FWRRTGVNFDLGAHSEHDLKLSLPLDTQPRAAYTPLVRGWNQPVDLGAMGDPRSFGAGNSLGTTQRMKHAPPLAGTLLRG
KLDPVENQSSRADEKSSGQTAAYKERFR

Sequences:

>Translated_188_residues
MDFRRSRWIPLGSTPCLPRLAGSGLWRQFSGHSSGGDVFPRDAILWSRRRRHCYPARHAICACMAPIGNRTGMPALRFNL
FWRRTGVNFDLGAHSEHDLKLSLPLDTQPRAAYTPLVRGWNQPVDLGAMGDPRSFGAGNSLGTTQRMKHAPPLAGTLLRG
KLDPVENQSSRADEKSSGQTAAYKERFR
>Mature_188_residues
MDFRRSRWIPLGSTPCLPRLAGSGLWRQFSGHSSGGDVFPRDAILWSRRRRHCYPARHAICACMAPIGNRTGMPALRFNL
FWRRTGVNFDLGAHSEHDLKLSLPLDTQPRAAYTPLVRGWNQPVDLGAMGDPRSFGAGNSLGTTQRMKHAPPLAGTLLRG
KLDPVENQSSRADEKSSGQTAAYKERFR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20925; Mature: 20925

Theoretical pI: Translated: 11.48; Mature: 11.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFRRSRWIPLGSTPCLPRLAGSGLWRQFSGHSSGGDVFPRDAILWSRRRRHCYPARHAI
CCCCCCCCCCCCCCCCCHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHH
CACMAPIGNRTGMPALRFNLFWRRTGVNFDLGAHSEHDLKLSLPLDTQPRAAYTPLVRGW
HHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHCC
NQPVDLGAMGDPRSFGAGNSLGTTQRMKHAPPLAGTLLRGKLDPVENQSSRADEKSSGQT
CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
AAYKERFR
HHHHHHCC
>Mature Secondary Structure
MDFRRSRWIPLGSTPCLPRLAGSGLWRQFSGHSSGGDVFPRDAILWSRRRRHCYPARHAI
CCCCCCCCCCCCCCCCCHHHHCCCHHHHCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHH
CACMAPIGNRTGMPALRFNLFWRRTGVNFDLGAHSEHDLKLSLPLDTQPRAAYTPLVRGW
HHHHHCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEECCCCCCCCCHHHHHHHCC
NQPVDLGAMGDPRSFGAGNSLGTTQRMKHAPPLAGTLLRGKLDPVENQSSRADEKSSGQT
CCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCC
AAYKERFR
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA