Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 89053216

GI number: 89053216

Start: 694608

End: 695786

Strand: Reverse

Name: yfdE [H]

Synonym: Jann_0725

Alternate gene names: 89053216

Gene position: 695786-694608 (Counterclockwise)

Preceding gene: 89053217

Following gene: 89053213

Centisome position: 16.11

GC content: 61.92

Gene sequence:

>1179_bases
ATGGCGGCACCGCTCAAGGGGATCCGCGTGATCGACTGGACCCATGTCCTCGCGGGGCCCGCCTGTGCCTATTATCTGGG
GCAATTGGGGGCGGAGGTGATCAAGGTTGAGCGGCCCGGACGCGGGGACGCCATGCGCCATCGGGGCGGCAGTGATGCCC
GGGGCGCGTCAGACGGGATGAGCACGGCCTTCCTGACCCAGGCGGCGGGCAAGCTCTCGGTCGCAATTGATCTGAAAACG
CCCGATGGCCGTGAGGTCTTTGACCGCCTGCTTAGGTCAGCGGACGTTCTGGTGGAAAATCATCGCCCGTCCACGCTTGA
AAAACTGACCCTTACCGAGGCCGAGACACGCGCCATCAATCCTCGGCTCATCCATTGTGCCATGACGGGCTATGGACGTG
ACAATGCGATGTCAGACGCCCCGGCTTATGACGTCAACATCCAGGCGATCAGCGGATTGATGGCGTTGACGGGCACCCGT
GAGACAGGACCCATCCGCACGGGCGCGCCAATCATCGACTATGCAACGGGTCTGACCGGTGCCTTAGCGGTTGTCTCCGC
GCTGATGGCCCGCACCCACAGCGGCGAGGGGAGTTTCGTGGACGTATCCATGTTGGAGACGGCGTTTGCTCTGATGAGTT
CCACGATCACCGATTACCGCCTGACTGGAACGGAGCCGCAACCGCGTGGCAATGCCGCCAACAGCCGCTCCCCCTCCTCG
GGCACATTTGCCTGCGCCGTCGGGCACCTCAGTCTGGGCGTGAATGAGGAGGCGCAGTTCCAAGCCCTTGCCGTCGCCAT
CGGAAAGACATCTTGGCTGAGCGATCCGCGTTTTCTGACACCAGACGCCAGAGACAGAAACCGCGCGGCCCTGACGGAGG
ATCTGAGCGCGGTTCTGCTGACAAAGCCGGCAGACGAATGGGAAAAGTTGCTGCTTGCGGCCGGCGTGCCCTGCGCGCGT
TTGCGACGGCTTTCCGAAGCCCTTGAATTGCCACCAAGTTTCGACCGAAGTTATGAAAACCGAGGGGCAGCGGGGTATCC
GGGATTGCCGTTCAAACTTGATCACGACAGGTCCGATATCAACCCCCGCCAGCTCGGCGCTGACACGAAGTCCGTCTTGA
AGGATCTGGACTTCGATGAGGTTGAGATTGACGCCATGCGCGCCAAGGGTGTCATCTGA

Upstream 100 bases:

>100_bases
CCATCGCGCTTGTGTTCCTGCTCATCGGCATCGCCGCAATGATTGCCCGCATCCGCAGCCTCAACAAACAGGCGCGCGCA
ACGGCCATGGGAGACGCGTG

Downstream 100 bases:

>100_bases
AAAACGGAGGCGAGCCGCTGGTGCTCGCCCCATATGCTGGTGCACGCCTCACATAATCGGGTGGTTACTGGTCGGGCGTG
ACAAACGCAGGTGCCGCAAA

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 392; Mature: 391

Protein sequence:

>392_residues
MAAPLKGIRVIDWTHVLAGPACAYYLGQLGAEVIKVERPGRGDAMRHRGGSDARGASDGMSTAFLTQAAGKLSVAIDLKT
PDGREVFDRLLRSADVLVENHRPSTLEKLTLTEAETRAINPRLIHCAMTGYGRDNAMSDAPAYDVNIQAISGLMALTGTR
ETGPIRTGAPIIDYATGLTGALAVVSALMARTHSGEGSFVDVSMLETAFALMSSTITDYRLTGTEPQPRGNAANSRSPSS
GTFACAVGHLSLGVNEEAQFQALAVAIGKTSWLSDPRFLTPDARDRNRAALTEDLSAVLLTKPADEWEKLLLAAGVPCAR
LRRLSEALELPPSFDRSYENRGAAGYPGLPFKLDHDRSDINPRQLGADTKSVLKDLDFDEVEIDAMRAKGVI

Sequences:

>Translated_392_residues
MAAPLKGIRVIDWTHVLAGPACAYYLGQLGAEVIKVERPGRGDAMRHRGGSDARGASDGMSTAFLTQAAGKLSVAIDLKT
PDGREVFDRLLRSADVLVENHRPSTLEKLTLTEAETRAINPRLIHCAMTGYGRDNAMSDAPAYDVNIQAISGLMALTGTR
ETGPIRTGAPIIDYATGLTGALAVVSALMARTHSGEGSFVDVSMLETAFALMSSTITDYRLTGTEPQPRGNAANSRSPSS
GTFACAVGHLSLGVNEEAQFQALAVAIGKTSWLSDPRFLTPDARDRNRAALTEDLSAVLLTKPADEWEKLLLAAGVPCAR
LRRLSEALELPPSFDRSYENRGAAGYPGLPFKLDHDRSDINPRQLGADTKSVLKDLDFDEVEIDAMRAKGVI
>Mature_391_residues
AAPLKGIRVIDWTHVLAGPACAYYLGQLGAEVIKVERPGRGDAMRHRGGSDARGASDGMSTAFLTQAAGKLSVAIDLKTP
DGREVFDRLLRSADVLVENHRPSTLEKLTLTEAETRAINPRLIHCAMTGYGRDNAMSDAPAYDVNIQAISGLMALTGTRE
TGPIRTGAPIIDYATGLTGALAVVSALMARTHSGEGSFVDVSMLETAFALMSSTITDYRLTGTEPQPRGNAANSRSPSSG
TFACAVGHLSLGVNEEAQFQALAVAIGKTSWLSDPRFLTPDARDRNRAALTEDLSAVLLTKPADEWEKLLLAAGVPCARL
RRLSEALELPPSFDRSYENRGAAGYPGLPFKLDHDRSDINPRQLGADTKSVLKDLDFDEVEIDAMRAKGVI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=405, Percent_Identity=30.3703703703704, Blast_Score=187, Evalue=2e-47,
Organism=Homo sapiens, GI300863124, Length=332, Percent_Identity=31.9277108433735, Blast_Score=180, Evalue=2e-45,
Organism=Homo sapiens, GI13376042, Length=332, Percent_Identity=28.6144578313253, Blast_Score=144, Evalue=1e-34,
Organism=Homo sapiens, GI300863126, Length=405, Percent_Identity=26.6666666666667, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI266456254, Length=271, Percent_Identity=30.9963099630996, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI42794625, Length=271, Percent_Identity=30.9963099630996, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI266458397, Length=271, Percent_Identity=31.3653136531365, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI266458393, Length=269, Percent_Identity=30.8550185873606, Blast_Score=117, Evalue=2e-26,
Organism=Homo sapiens, GI266458395, Length=149, Percent_Identity=34.2281879194631, Blast_Score=85, Evalue=1e-16,
Organism=Homo sapiens, GI42822893, Length=149, Percent_Identity=34.2281879194631, Blast_Score=85, Evalue=1e-16,
Organism=Escherichia coli, GI87082093, Length=351, Percent_Identity=36.1823361823362, Blast_Score=208, Evalue=5e-55,
Organism=Escherichia coli, GI1788717, Length=422, Percent_Identity=28.9099526066351, Blast_Score=157, Evalue=9e-40,
Organism=Escherichia coli, GI1786222, Length=411, Percent_Identity=23.6009732360097, Blast_Score=87, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI32564160, Length=312, Percent_Identity=27.5641025641026, Blast_Score=102, Evalue=3e-22,
Organism=Caenorhabditis elegans, GI115535051, Length=316, Percent_Identity=27.2151898734177, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI24648431, Length=326, Percent_Identity=35.5828220858896, Blast_Score=190, Evalue=1e-48,
Organism=Drosophila melanogaster, GI24585488, Length=313, Percent_Identity=29.073482428115, Blast_Score=123, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 41905; Mature: 41774

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: PS00290 IG_MHC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAAPLKGIRVIDWTHVLAGPACAYYLGQLGAEVIKVERPGRGDAMRHRGGSDARGASDGM
CCCCCCCCEEEEHHHHHHCHHHHHHHHHHCHHEEEECCCCCCCHHHCCCCCCCCCCCCCC
STAFLTQAAGKLSVAIDLKTPDGREVFDRLLRSADVLVENHRPSTLEKLTLTEAETRAIN
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHEEECCCCCHHHHEECCHHHHHCCC
PRLIHCAMTGYGRDNAMSDAPAYDVNIQAISGLMALTGTRETGPIRTGAPIIDYATGLTG
CEEEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCHHH
ALAVVSALMARTHSGEGSFVDVSMLETAFALMSSTITDYRLTGTEPQPRGNAANSRSPSS
HHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCC
GTFACAVGHLSLGVNEEAQFQALAVAIGKTSWLSDPRFLTPDARDRNRAALTEDLSAVLL
CEEEEEEEEEECCCCCCHHHEEEEHHHCCHHCCCCCCEECCCCCCCCHHHHHHHHHEEEE
TKPADEWEKLLLAAGVPCARLRRLSEALELPPSFDRSYENRGAAGYPGLPFKLDHDRSDI
ECCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
NPRQLGADTKSVLKDLDFDEVEIDAMRAKGVI
CHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCC
>Mature Secondary Structure 
AAPLKGIRVIDWTHVLAGPACAYYLGQLGAEVIKVERPGRGDAMRHRGGSDARGASDGM
CCCCCCCEEEEHHHHHHCHHHHHHHHHHCHHEEEECCCCCCCHHHCCCCCCCCCCCCCC
STAFLTQAAGKLSVAIDLKTPDGREVFDRLLRSADVLVENHRPSTLEKLTLTEAETRAIN
HHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHEEECCCCCHHHHEECCHHHHHCCC
PRLIHCAMTGYGRDNAMSDAPAYDVNIQAISGLMALTGTRETGPIRTGAPIIDYATGLTG
CEEEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHCHHH
ALAVVSALMARTHSGEGSFVDVSMLETAFALMSSTITDYRLTGTEPQPRGNAANSRSPSS
HHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCC
GTFACAVGHLSLGVNEEAQFQALAVAIGKTSWLSDPRFLTPDARDRNRAALTEDLSAVLL
CEEEEEEEEEECCCCCCHHHEEEEHHHCCHHCCCCCCEECCCCCCCCHHHHHHHHHEEEE
TKPADEWEKLLLAAGVPCARLRRLSEALELPPSFDRSYENRGAAGYPGLPFKLDHDRSDI
ECCHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
NPRQLGADTKSVLKDLDFDEVEIDAMRAKGVI
CHHHCCCCHHHHHHHCCCCHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]