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The map label for this gene is yafC [H]

Identifier: 89053213

GI number: 89053213

Start: 692872

End: 693756

Strand: Reverse

Name: yafC [H]

Synonym: Jann_0722

Alternate gene names: 89053213

Gene position: 693756-692872 (Counterclockwise)

Preceding gene: 89053216

Following gene: 89053211

Centisome position: 16.07

GC content: 63.16

Gene sequence:

>885_bases
ATGGCTTTGGACTGGCACGACCTGAAAGTGTTTCTCGCAATGGAACGCGGCAAATCAGCCCGCGCGGCCGCCGCGAGCCT
GGGGTCGAGCCATTCGACGGTCCTGCGCAGGTTACAGGCGTTGGAGGCGGCGCTGGGGGCACGCGTTTTTGACCGCACAC
CCGATGGCTTGGCGATAACCGGTGCGGGTGAAAGGCTCCTGACCAAGGCACAGCAGATCGAAGCGGACGTGCTTGAGGTG
GAGCGGGATGTGGCGCAGTCCGACATCGTCCTGAAAGGTCCGGTCCGATTGACGGCCCCTCCGGCGGTCCTGAAGTACCT
TTTGTTGCCCGCCCTGTCGCAATTCCGCGCTGACTACCCGGATATTACATTAGACGTCATTGCAACCGACGGGTTCTCGG
ATCTGGGCAGACGCGACGCCGACATTGCGATCCGGTTTGCAGCGAACCCGGACGAGTATCTGGTGGGCAGAACGCTCCCT
CCCTTTCATGATGCCATATACGTGGCCGCCGATCACTCCGGCGGCCCGGATACCGGGCATCAGGACGGCTGGATCGCGTG
GACCGCCGAACAACGTTTTCAGGATCGCATCGCGCGCACGCCGTTTGCCGCGTCGCCAATCGGTTGGCGGTTGCCCGGGC
TGGAGTTGCAAGCGGAGGCGGCGAGACAAGGGCTCGGCATGGCGCTTCTACCGTGCATCATGGGTGATACGGATCCGGCG
CTTAAACGCCTTGCCCCCGCATTCACACAGCCCACCCTTCCCGCATGGCTGCTGCGCCACCCGGATCTCCGGCGCCTGGA
GCGCGTGCGGGTCTTTGCGCAGTTTCTGTCTGACAAGATATCCGAGCAGCGCGATTTCGTGGCGGGTGTCTTGGGTGAAG
GCTAA

Upstream 100 bases:

>100_bases
GGCAAACCCGTCGCAAGCATGTCATGGATCAATCTGCGCCGGATGATCTAATGTTGATGACGCTATGGTTCATTTATGAA
CCAGTGGACTGGAGTGGCCC

Downstream 100 bases:

>100_bases
CGTACTGCTGGCATCTGTACCTTTTGGGAGGGCTCCAGCGCATCATCGAACCCTCGTCTTAGATAGCTTTTGCTGCGCGC
AGGCGTAAGGCACACGCGGT

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 294; Mature: 293

Protein sequence:

>294_residues
MALDWHDLKVFLAMERGKSARAAAASLGSSHSTVLRRLQALEAALGARVFDRTPDGLAITGAGERLLTKAQQIEADVLEV
ERDVAQSDIVLKGPVRLTAPPAVLKYLLLPALSQFRADYPDITLDVIATDGFSDLGRRDADIAIRFAANPDEYLVGRTLP
PFHDAIYVAADHSGGPDTGHQDGWIAWTAEQRFQDRIARTPFAASPIGWRLPGLELQAEAARQGLGMALLPCIMGDTDPA
LKRLAPAFTQPTLPAWLLRHPDLRRLERVRVFAQFLSDKISEQRDFVAGVLGEG

Sequences:

>Translated_294_residues
MALDWHDLKVFLAMERGKSARAAAASLGSSHSTVLRRLQALEAALGARVFDRTPDGLAITGAGERLLTKAQQIEADVLEV
ERDVAQSDIVLKGPVRLTAPPAVLKYLLLPALSQFRADYPDITLDVIATDGFSDLGRRDADIAIRFAANPDEYLVGRTLP
PFHDAIYVAADHSGGPDTGHQDGWIAWTAEQRFQDRIARTPFAASPIGWRLPGLELQAEAARQGLGMALLPCIMGDTDPA
LKRLAPAFTQPTLPAWLLRHPDLRRLERVRVFAQFLSDKISEQRDFVAGVLGEG
>Mature_293_residues
ALDWHDLKVFLAMERGKSARAAAASLGSSHSTVLRRLQALEAALGARVFDRTPDGLAITGAGERLLTKAQQIEADVLEVE
RDVAQSDIVLKGPVRLTAPPAVLKYLLLPALSQFRADYPDITLDVIATDGFSDLGRRDADIAIRFAANPDEYLVGRTLPP
FHDAIYVAADHSGGPDTGHQDGWIAWTAEQRFQDRIARTPFAASPIGWRLPGLELQAEAARQGLGMALLPCIMGDTDPAL
KRLAPAFTQPTLPAWLLRHPDLRRLERVRVFAQFLSDKISEQRDFVAGVLGEG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786401, Length=293, Percent_Identity=25.938566552901, Blast_Score=92, Evalue=3e-20,
Organism=Escherichia coli, GI145693193, Length=154, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787128, Length=161, Percent_Identity=23.6024844720497, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI1789440, Length=153, Percent_Identity=26.797385620915, Blast_Score=65, Evalue=4e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 32087; Mature: 31956

Theoretical pI: Translated: 5.97; Mature: 5.97

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALDWHDLKVFLAMERGKSARAAAASLGSSHSTVLRRLQALEAALGARVFDRTPDGLAIT
CCCCHHHHEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
GAGERLLTKAQQIEADVLEVERDVAQSDIVLKGPVRLTAPPAVLKYLLLPALSQFRADYP
CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEECCCHHHHHHHHHHHHHHHCCCCC
DITLDVIATDGFSDLGRRDADIAIRFAANPDEYLVGRTLPPFHDAIYVAADHSGGPDTGH
CEEEEEEEECCHHHHCCCCCCEEEEEECCCCCEEECCCCCCCCCEEEEEECCCCCCCCCC
QDGWIAWTAEQRFQDRIARTPFAASPIGWRLPGLELQAEAARQGLGMALLPCIMGDTDPA
CCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHCCCCHHHHHHHCCCCCHH
LKRLAPAFTQPTLPAWLLRHPDLRRLERVRVFAQFLSDKISEQRDFVAGVLGEG
HHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
ALDWHDLKVFLAMERGKSARAAAASLGSSHSTVLRRLQALEAALGARVFDRTPDGLAIT
CCCHHHHEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE
GAGERLLTKAQQIEADVLEVERDVAQSDIVLKGPVRLTAPPAVLKYLLLPALSQFRADYP
CCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCEEECCCHHHHHHHHHHHHHHHCCCCC
DITLDVIATDGFSDLGRRDADIAIRFAANPDEYLVGRTLPPFHDAIYVAADHSGGPDTGH
CEEEEEEEECCHHHHCCCCCCEEEEEECCCCCEEECCCCCCCCCEEEEEECCCCCCCCCC
QDGWIAWTAEQRFQDRIARTPFAASPIGWRLPGLELQAEAARQGLGMALLPCIMGDTDPA
CCCEEEEEHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHCCCCHHHHHHHCCCCCHH
LKRLAPAFTQPTLPAWLLRHPDLRRLERVRVFAQFLSDKISEQRDFVAGVLGEG
HHHHHHHHCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]