Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 89053211

GI number: 89053211

Start: 689582

End: 690403

Strand: Reverse

Name: radC [C]

Synonym: Jann_0720

Alternate gene names: 89053211

Gene position: 690403-689582 (Counterclockwise)

Preceding gene: 89053213

Following gene: 89053202

Centisome position: 15.99

GC content: 62.04

Gene sequence:

>822_bases
ATGCGGGGGCTGACGGACCTTGACGCGCGCATGCCACCCCCCGACGTGGAAACGCGGCCCGCCTTCGCGGCGGGGTATCA
ATCCAATGCGCGCCTCCACGCGGATCATGCGGCGGGTGGCGGGCTCGTCACAGACAATGACGGGGCGAAGCGGCCCCATT
ACTGGGGACACCGCGACCGGCTCCGGACCCGCTTTCTGGCCGGGGGCCACGGGCCGATGCCGGAATATGAGCTTCTGGAA
CTGATGTTGTTCAACGCCATATCGCGCATTGATGTGAAACCTCTCGCCAAGCGGCTTCTGGCGGCCTTTGGTGATCTGAA
CGGTGTCATCGCCGCCTCCGAGCACAGGCTTTTGCAGGTTGAGGGTGCGACCCCGAAGGTCTACTACCACCTCCGCCTGA
TGGAGGCTTTCGCCCATCGCATGGGGCAGGCCAAGGTCTTGCAGCGCGATGTCGTCTCCTCCTGGGATGATCTTGTGGCC
TATTGCCGGACCGTGATGGCCCACCGCGAGACAGAGCAATTCCGGATCCTCTATCTCAACCGCAGGAATGTCCTGATCGC
CGATGAAGCGGTGGGCACCGGCACCGTTGATCACGTGCCCGTCTATCCGCGCGAAGTGGCAAAACGCTCGTTGGAGCTGA
ATGCGACGGCGATCATTCTGGTGCACAACCATCCGTCCGGCGACCCGACGCCGAGCCAGGCCGATATCGACGTCACACAA
GCTGTGCAACTGGCCTGTGATGCCATTGGCGTTGTGGTGCATGACCACGTCATCATCGGCAAGCAAAGTGAAACGTCGTT
CAGGGCGGATTTGTTGATGTAG

Upstream 100 bases:

>100_bases
GAAGGTCCAGGAACTTCGGGAAAACCCGTTGATCAATGGCGGGCTCGCAAACGCCAGGCGCGTGCCCCCCCCGCGGGCAG
ATGATCTGTCCGATGATGCC

Downstream 100 bases:

>100_bases
AAGGCGAAGGGTCACGCGACCGCGCCGCCGAAACATCTCGGGGTCGACCACGCAGACATCTTAGACGCCCCGCCCTCACC
CACGCTGAGCCCGCGTTGCG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 273; Mature: 273

Protein sequence:

>273_residues
MRGLTDLDARMPPPDVETRPAFAAGYQSNARLHADHAAGGGLVTDNDGAKRPHYWGHRDRLRTRFLAGGHGPMPEYELLE
LMLFNAISRIDVKPLAKRLLAAFGDLNGVIAASEHRLLQVEGATPKVYYHLRLMEAFAHRMGQAKVLQRDVVSSWDDLVA
YCRTVMAHRETEQFRILYLNRRNVLIADEAVGTGTVDHVPVYPREVAKRSLELNATAIILVHNHPSGDPTPSQADIDVTQ
AVQLACDAIGVVVHDHVIIGKQSETSFRADLLM

Sequences:

>Translated_273_residues
MRGLTDLDARMPPPDVETRPAFAAGYQSNARLHADHAAGGGLVTDNDGAKRPHYWGHRDRLRTRFLAGGHGPMPEYELLE
LMLFNAISRIDVKPLAKRLLAAFGDLNGVIAASEHRLLQVEGATPKVYYHLRLMEAFAHRMGQAKVLQRDVVSSWDDLVA
YCRTVMAHRETEQFRILYLNRRNVLIADEAVGTGTVDHVPVYPREVAKRSLELNATAIILVHNHPSGDPTPSQADIDVTQ
AVQLACDAIGVVVHDHVIIGKQSETSFRADLLM
>Mature_273_residues
MRGLTDLDARMPPPDVETRPAFAAGYQSNARLHADHAAGGGLVTDNDGAKRPHYWGHRDRLRTRFLAGGHGPMPEYELLE
LMLFNAISRIDVKPLAKRLLAAFGDLNGVIAASEHRLLQVEGATPKVYYHLRLMEAFAHRMGQAKVLQRDVVSSWDDLVA
YCRTVMAHRETEQFRILYLNRRNVLIADEAVGTGTVDHVPVYPREVAKRSLELNATAIILVHNHPSGDPTPSQADIDVTQ
AVQLACDAIGVVVHDHVIIGKQSETSFRADLLM

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=206, Percent_Identity=29.6116504854369, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI2367100, Length=107, Percent_Identity=48.5981308411215, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1788997, Length=107, Percent_Identity=47.6635514018692, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1788312, Length=102, Percent_Identity=49.0196078431373, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 30247; Mature: 30247

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGLTDLDARMPPPDVETRPAFAAGYQSNARLHADHAAGGGLVTDNDGAKRPHYWGHRDR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCCCCCCCCCHHH
LRTRFLAGGHGPMPEYELLELMLFNAISRIDVKPLAKRLLAAFGDLNGVIAASEHRLLQV
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCEEEEE
EGATPKVYYHLRLMEAFAHRMGQAKVLQRDVVSSWDDLVAYCRTVMAHRETEQFRILYLN
ECCCCEEEHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEE
RRNVLIADEAVGTGTVDHVPVYPREVAKRSLELNATAIILVHNHPSGDPTPSQADIDVTQ
CCCEEEECCCCCCCCCCCCCCCHHHHHHHCEECCCEEEEEEEECCCCCCCCCCCCCHHHH
AVQLACDAIGVVVHDHVIIGKQSETSFRADLLM
HHHHHHHHHHHEEECEEEEECCCCCCHHHHCCC
>Mature Secondary Structure
MRGLTDLDARMPPPDVETRPAFAAGYQSNARLHADHAAGGGLVTDNDGAKRPHYWGHRDR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEECCCCCCCCCCCCCHHH
LRTRFLAGGHGPMPEYELLELMLFNAISRIDVKPLAKRLLAAFGDLNGVIAASEHRLLQV
HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEECCCEEEEE
EGATPKVYYHLRLMEAFAHRMGQAKVLQRDVVSSWDDLVAYCRTVMAHRETEQFRILYLN
ECCCCEEEHHHHHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEEEE
RRNVLIADEAVGTGTVDHVPVYPREVAKRSLELNATAIILVHNHPSGDPTPSQADIDVTQ
CCCEEEECCCCCCCCCCCCCCCHHHHHHHCEECCCEEEEEEEECCCCCCCCCCCCCHHHH
AVQLACDAIGVVVHDHVIIGKQSETSFRADLLM
HHHHHHHHHHHEEECEEEEECCCCCCHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA