| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89053063
Identifier: 89053063
GI number: 89053063
Start: 561658
End: 562560
Strand: Direct
Name: 89053063
Synonym: Jann_0572
Alternate gene names: NA
Gene position: 561658-562560 (Clockwise)
Preceding gene: 89053062
Following gene: 89053064
Centisome position: 13.01
GC content: 60.02
Gene sequence:
>903_bases ATGAGCGTTGTGAACAAGATCATTGGCGTGTGCCGGTTCTCGTACCTTGGGCTGGGTGGGTTTCGGATCAATGAGGCGGG CGCGGAAGAGGCCGCGAAAGCGCTTTATGCGGCCGACCGCATGACCCTCCGTTTCGCGTATTTCGAGACTATCTGCCTGC CATCCCTTGCTGCGCAAACGGACTCTGACTTTACGTTCGTTGCTTTGATTGCGGACACGATGCCGCTGCCGTTTCGCCAG CGCCTCAAGCGGTTGACGGAAACGTACCCATTCCTGCGCATCGCCGTTCTGGAAAGCACGGGTCCCTACAATTCCACGCG TCGGGCGTTTTCGCGTGGTCTTGATGGGCAAGAGACGGACTTTATCACGGGCTTCCGGCTGGACGATGATGATGCGGTCA GCGTCGACTACATCGCGCGGACCAGAGAAGCGGCTGACACGCTCATCACGCTTGGATGGGCGACAAAAGACGACCCCGCA GCCGTGTGCTTCCATCGCGGCATTTACTGGGACATGAAACGGCCCGACGCGCCATTCTGGGACTATTCCGAGATCCAGCC CTTGGGGCTGGCCAGCGCCATGGTCCACCACCGCGACAGTCGGCAGAACATATATCGCTGGAACCACCGCAAACTGGCAA GCAAGGTCCGTTGCTGGACCGACCCGAGTGACGTTATGTTCCTGCGCACGCTACATGACCACAACGACAGCGGTCGCGTG ATGCCCCGTGATGCGGAGCAAATACCTGACGAACAGGCCCGAAGGCTGCTTAAGGATCGCTTTGGTTTGAACCCGAAGCG GCTACTGTCCACCATGGATAGGGTGCACGGCGGCACGGATGCCGCACGGCAATGGGCGGCGGAGACCCGCGAAGATCCTT TCGGGAAGGACGGCGACGCATGA
Upstream 100 bases:
>100_bases TCGCGTCCTTCCTGCGGCAAGTCCTCCGCTGATCCAAGGGGGTTTCCCCCCAGCCGCCAATTCGCCTAACGTCCGCCTAT CCGTCGGCTAGGAACCCGTC
Downstream 100 bases:
>100_bases CGCCAAATCTGAAGGGTGCCCTGTTCATGACGGGCTCCATGGCATCGTTTGTGTTGAACGATGTGGTGATCAAGGTCCTG TCCGATGACTTGCCGCTGTT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 300; Mature: 299
Protein sequence:
>300_residues MSVVNKIIGVCRFSYLGLGGFRINEAGAEEAAKALYAADRMTLRFAYFETICLPSLAAQTDSDFTFVALIADTMPLPFRQ RLKRLTETYPFLRIAVLESTGPYNSTRRAFSRGLDGQETDFITGFRLDDDDAVSVDYIARTREAADTLITLGWATKDDPA AVCFHRGIYWDMKRPDAPFWDYSEIQPLGLASAMVHHRDSRQNIYRWNHRKLASKVRCWTDPSDVMFLRTLHDHNDSGRV MPRDAEQIPDEQARRLLKDRFGLNPKRLLSTMDRVHGGTDAARQWAAETREDPFGKDGDA
Sequences:
>Translated_300_residues MSVVNKIIGVCRFSYLGLGGFRINEAGAEEAAKALYAADRMTLRFAYFETICLPSLAAQTDSDFTFVALIADTMPLPFRQ RLKRLTETYPFLRIAVLESTGPYNSTRRAFSRGLDGQETDFITGFRLDDDDAVSVDYIARTREAADTLITLGWATKDDPA AVCFHRGIYWDMKRPDAPFWDYSEIQPLGLASAMVHHRDSRQNIYRWNHRKLASKVRCWTDPSDVMFLRTLHDHNDSGRV MPRDAEQIPDEQARRLLKDRFGLNPKRLLSTMDRVHGGTDAARQWAAETREDPFGKDGDA >Mature_299_residues SVVNKIIGVCRFSYLGLGGFRINEAGAEEAAKALYAADRMTLRFAYFETICLPSLAAQTDSDFTFVALIADTMPLPFRQR LKRLTETYPFLRIAVLESTGPYNSTRRAFSRGLDGQETDFITGFRLDDDDAVSVDYIARTREAADTLITLGWATKDDPAA VCFHRGIYWDMKRPDAPFWDYSEIQPLGLASAMVHHRDSRQNIYRWNHRKLASKVRCWTDPSDVMFLRTLHDHNDSGRVM PRDAEQIPDEQARRLLKDRFGLNPKRLLSTMDRVHGGTDAARQWAAETREDPFGKDGDA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 34151; Mature: 34020
Theoretical pI: Translated: 6.88; Mature: 6.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVVNKIIGVCRFSYLGLGGFRINEAGAEEAAKALYAADRMTLRFAYFETICLPSLAAQT CHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DSDFTFVALIADTMPLPFRQRLKRLTETYPFLRIAVLESTGPYNSTRRAFSRGLDGQETD CCCCEEEEEEHHCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCC FITGFRLDDDDAVSVDYIARTREAADTLITLGWATKDDPAAVCFHRGIYWDMKRPDAPFW EEEEEEECCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHCCEEEECCCCCCCCC DYSEIQPLGLASAMVHHRDSRQNIYRWNHRKLASKVRCWTDPSDVMFLRTLHDHNDSGRV CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHEEHHHHHCCCCCCCC MPRDAEQIPDEQARRLLKDRFGLNPKRLLSTMDRVHGGTDAARQWAAETREDPFGKDGDA CCCCHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure SVVNKIIGVCRFSYLGLGGFRINEAGAEEAAKALYAADRMTLRFAYFETICLPSLAAQT HHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC DSDFTFVALIADTMPLPFRQRLKRLTETYPFLRIAVLESTGPYNSTRRAFSRGLDGQETD CCCCEEEEEEHHCCCCCHHHHHHHHHHHCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCC FITGFRLDDDDAVSVDYIARTREAADTLITLGWATKDDPAAVCFHRGIYWDMKRPDAPFW EEEEEEECCCCCCCHHHHHHHHHHHHHEEEECCCCCCCCHHHHHHCCEEEECCCCCCCCC DYSEIQPLGLASAMVHHRDSRQNIYRWNHRKLASKVRCWTDPSDVMFLRTLHDHNDSGRV CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCHHEEHHHHHCCCCCCCC MPRDAEQIPDEQARRLLKDRFGLNPKRLLSTMDRVHGGTDAARQWAAETREDPFGKDGDA CCCCHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA