| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
Click here to switch to the map view.
The map label for this gene is 89053014
Identifier: 89053014
GI number: 89053014
Start: 514692
End: 515186
Strand: Reverse
Name: 89053014
Synonym: Jann_0523
Alternate gene names: NA
Gene position: 515186-514692 (Counterclockwise)
Preceding gene: 89053017
Following gene: 89053002
Centisome position: 11.93
GC content: 59.39
Gene sequence:
>495_bases ATGCTTGTCCGCCTGTGCAAGATCGCAATGCTTCTCGGCCTCGCCTCATTTGCCTTTCTTGTGACGTTCAACAACGTCAC CGATTACCAGTCCAACTTCGCGTTTGTGCAACACGTCCTGTCGATGGACACGACCTTCCCCGACAACGCCGCCATGTACC GCGCGGTCGAGACGCCGTGGATGTGGCACGCGGGCTACTGGATGATCATCGCCGGAGAAGGGCTGACCGCCCTGCTGCTC CTGGCTGGGGCCGCGAGCCTTTTCATAGCCCGCAATGATCCCGCCATCGTGTTCCAGGATCGCAAGGCGCTTGCGGTTGT GGGCTGCACCATCGGTTTTCTCGTGTGGTTCGTGGGCTTCATGACCGTGGGCGGCGAATGGTTCCTGATGTGGCAATCCG ACATCTGGAACGGCCAGCAAGCCGCGTTCCGGTTCTACATGTCGATACTGGTCGTGCTGATCTTCGTGATGCAACCGGAT GAAGAGGTCCGCTAG
Upstream 100 bases:
>100_bases AACTGCCGACTTGTCCCGAATCCTCGCTGACCTGCTGGAACTTTTCCAAGGCGAAACTCATTAGTTCAACGTGCGCACTC ATTTGTTCGGAGATTTTTTC
Downstream 100 bases:
>100_bases AGCCGCCTCATTCGCCCGCCAGCTGCGCCAGTAAGTCTTTCGCCGCCTGCTGCTCGGCCTGACGTTTGGCTTTGGCCTGA GCCTCCGCGTTTTCGCCGGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 164; Mature: 164
Protein sequence:
>164_residues MLVRLCKIAMLLGLASFAFLVTFNNVTDYQSNFAFVQHVLSMDTTFPDNAAMYRAVETPWMWHAGYWMIIAGEGLTALLL LAGAASLFIARNDPAIVFQDRKALAVVGCTIGFLVWFVGFMTVGGEWFLMWQSDIWNGQQAAFRFYMSILVVLIFVMQPD EEVR
Sequences:
>Translated_164_residues MLVRLCKIAMLLGLASFAFLVTFNNVTDYQSNFAFVQHVLSMDTTFPDNAAMYRAVETPWMWHAGYWMIIAGEGLTALLL LAGAASLFIARNDPAIVFQDRKALAVVGCTIGFLVWFVGFMTVGGEWFLMWQSDIWNGQQAAFRFYMSILVVLIFVMQPD EEVR >Mature_164_residues MLVRLCKIAMLLGLASFAFLVTFNNVTDYQSNFAFVQHVLSMDTTFPDNAAMYRAVETPWMWHAGYWMIIAGEGLTALLL LAGAASLFIARNDPAIVFQDRKALAVVGCTIGFLVWFVGFMTVGGEWFLMWQSDIWNGQQAAFRFYMSILVVLIFVMQPD EEVR
Specific function: Unknown
COG id: COG5472
COG function: function code S; Predicted small integral membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18540; Mature: 18540
Theoretical pI: Translated: 4.70; Mature: 4.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 6.1 %Met (Translated Protein) 7.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 6.1 %Met (Mature Protein) 7.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVRLCKIAMLLGLASFAFLVTFNNVTDYQSNFAFVQHVLSMDTTFPDNAAMYRAVETPW CHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHEEECCCE MWHAGYWMIIAGEGLTALLLLAGAASLFIARNDPAIVFQDRKALAVVGCTIGFLVWFVGF EEECCEEEEEECCCHHHHHHHHHHHHEEEECCCCEEEEECCCEEEHHHHHHHHHHHHHHH MTVGGEWFLMWQSDIWNGQQAAFRFYMSILVVLIFVMQPDEEVR HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure MLVRLCKIAMLLGLASFAFLVTFNNVTDYQSNFAFVQHVLSMDTTFPDNAAMYRAVETPW CHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHCCCCCCCHHHHEEECCCE MWHAGYWMIIAGEGLTALLLLAGAASLFIARNDPAIVFQDRKALAVVGCTIGFLVWFVGF EEECCEEEEEECCCHHHHHHHHHHHHEEEECCCCEEEEECCCEEEHHHHHHHHHHHHHHH MTVGGEWFLMWQSDIWNGQQAAFRFYMSILVVLIFVMQPDEEVR HHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA