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The map label for this gene is yggS [H]

Identifier: 89052905

GI number: 89052905

Start: 417738

End: 418391

Strand: Direct

Name: yggS [H]

Synonym: Jann_0414

Alternate gene names: 89052905

Gene position: 417738-418391 (Clockwise)

Preceding gene: 89052904

Following gene: 89052908

Centisome position: 9.67

GC content: 60.86

Gene sequence:

>654_bases
ATGGCATTGTCTGATATCACCACCCGCCTCGCCGCTTGCGCAGAGACCCATGGCCGCGCTGCAGCCGACATCACCTTGAT
TGCTGTCTCCAAAGTTCAACCGACCGAGCGGGTCGACGCCGTCCTGACGGAGGGCCACCGTATCTTTGGAGAGAATCGCG
TGCAGGAGGCCCAGGGGCGCTGGCCGGATTTTCAGGCGCGCTTTGACGGTATCGATCTGCATCTCATCGGGCCGTTACAA
ACCAACAAGGCCCGCCAAGCGGTGGAGATGTTCGGCACCATTCACACAGTGGACCGCCCCAAACTCGCCAAGACCCTGGC
CCGTTTGGCGCAGGAGCGTGGCACAAGCCCGGATCTTTTTATCCAGGTGAATACCGGGGAAGAACCTCAGAAGGCCGGCT
GCCTTCCATCCGAGGCCGATGCCTTCATCGCAGATGCGCGCGCCATGGACCTCCCTCTGCTGGGCTTGATGTGTATCCCC
CCGGTGGATGAAGAGCCGTCGCTGCACTTCGCCCTTCTGGCAAAGATCGCCAAACGAAACGGACTTTCGGGCCTGTCGAT
GGGCATGTCGTCTGATTTTGAGACGGCGATTGCCCAGGGCGCCACCCATATCCGTGTGGGCTCTGCCATCTTTGGGGAAC
GAACGCCTGTGTAG

Upstream 100 bases:

>100_bases
GTCCCTGGGCCTGGCAATGTCCTTCTAATCCAACCGGATTAGTTCGATTTGGGAAGAGCGGGCCTTGTGCCCGCTCTTTT
CTTTTGGTGAACCTGCCTGC

Downstream 100 bases:

>100_bases
GGTAGGTTTATCCCGTTGCCCGCGCCATCGGCGGGGCGAACCCTCGCCAAGTCACCTCGCCAATGTGTCGGGAACGATCA
ACCGCGTGCCATGGTTGATT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 216

Protein sequence:

>217_residues
MALSDITTRLAACAETHGRAAADITLIAVSKVQPTERVDAVLTEGHRIFGENRVQEAQGRWPDFQARFDGIDLHLIGPLQ
TNKARQAVEMFGTIHTVDRPKLAKTLARLAQERGTSPDLFIQVNTGEEPQKAGCLPSEADAFIADARAMDLPLLGLMCIP
PVDEEPSLHFALLAKIAKRNGLSGLSMGMSSDFETAIAQGATHIRVGSAIFGERTPV

Sequences:

>Translated_217_residues
MALSDITTRLAACAETHGRAAADITLIAVSKVQPTERVDAVLTEGHRIFGENRVQEAQGRWPDFQARFDGIDLHLIGPLQ
TNKARQAVEMFGTIHTVDRPKLAKTLARLAQERGTSPDLFIQVNTGEEPQKAGCLPSEADAFIADARAMDLPLLGLMCIP
PVDEEPSLHFALLAKIAKRNGLSGLSMGMSSDFETAIAQGATHIRVGSAIFGERTPV
>Mature_216_residues
ALSDITTRLAACAETHGRAAADITLIAVSKVQPTERVDAVLTEGHRIFGENRVQEAQGRWPDFQARFDGIDLHLIGPLQT
NKARQAVEMFGTIHTVDRPKLAKTLARLAQERGTSPDLFIQVNTGEEPQKAGCLPSEADAFIADARAMDLPLLGLMCIPP
VDEEPSLHFALLAKIAKRNGLSGLSMGMSSDFETAIAQGATHIRVGSAIFGERTPV

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=209, Percent_Identity=35.4066985645933, Blast_Score=100, Evalue=1e-21,
Organism=Escherichia coli, GI1789321, Length=222, Percent_Identity=36.036036036036, Blast_Score=127, Evalue=7e-31,
Organism=Caenorhabditis elegans, GI17533025, Length=220, Percent_Identity=33.6363636363636, Blast_Score=91, Evalue=4e-19,
Organism=Saccharomyces cerevisiae, GI6319435, Length=218, Percent_Identity=36.697247706422, Blast_Score=96, Evalue=3e-21,
Organism=Drosophila melanogaster, GI45550861, Length=216, Percent_Identity=36.5740740740741, Blast_Score=100, Evalue=8e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 23365; Mature: 23234

Theoretical pI: Translated: 5.95; Mature: 5.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MALSDITTRLAACAETHGRAAADITLIAVSKVQPTERVDAVLTEGHRIFGENRVQEAQGR
CCHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHCCHHHHCCHHHHHHCCC
WPDFQARFDGIDLHLIGPLQTNKARQAVEMFGTIHTVDRPKLAKTLARLAQERGTSPDLF
CCCCHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEE
IQVNTGEEPQKAGCLPSEADAFIADARAMDLPLLGLMCIPPVDEEPSLHFALLAKIAKRN
EEECCCCCHHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHC
GLSGLSMGMSSDFETAIAQGATHIRVGSAIFGERTPV
CCCCHHCCCCCCHHHHHHCCCCEEEECCHHCCCCCCC
>Mature Secondary Structure 
ALSDITTRLAACAETHGRAAADITLIAVSKVQPTERVDAVLTEGHRIFGENRVQEAQGR
CHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCHHHHHHHHHCCHHHHCCHHHHHHCCC
WPDFQARFDGIDLHLIGPLQTNKARQAVEMFGTIHTVDRPKLAKTLARLAQERGTSPDLF
CCCCHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCEE
IQVNTGEEPQKAGCLPSEADAFIADARAMDLPLLGLMCIPPVDEEPSLHFALLAKIAKRN
EEECCCCCHHHCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHC
GLSGLSMGMSSDFETAIAQGATHIRVGSAIFGERTPV
CCCCHHCCCCCCHHHHHHCCCCEEEECCHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]