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The map label for this gene is comF [H]

Identifier: 89052786

GI number: 89052786

Start: 302933

End: 303661

Strand: Direct

Name: comF [H]

Synonym: Jann_0295

Alternate gene names: 89052786

Gene position: 302933-303661 (Clockwise)

Preceding gene: 89052783

Following gene: 89052787

Centisome position: 7.02

GC content: 63.92

Gene sequence:

>729_bases
ATGAGATTGCAAACCATGTTGCATGCGGTGTTTCCGCCGGAATGCCTCAACTGCTCTGCGCGGGTGGAGGATGCGTTTGC
GATTTGTGGCAGTTGTTGGGGCGACACGCCATTCATCCTGGGGGCGGCCTGCGATCTGTGTGGCACAGGTTTGCCAGGGC
AAACGGCGGCGGAGGGGGAGGCGCTGATCTGCGGCGAATGCCAGCGCGTACCCCGCGCCTGGGACCATGCGCGCGCGGTC
TTTTCCTATGAAGGTGTCGGGCGAAAGCTGGTCCTGGCGCTGAAACACGGCGACCGCACCGATATCGCGCGGGCGGCTGG
TCCCTGGATGGCCCGTGCGGCGGCGGATCTGTTGGAAGACAAACCGCTTCTGGTGCCTGTCCCGCTTCATTGGACCCGCC
TTGCGCGGCGCAGGTTCAACCAATCCGCGCTGCTGGCCTGGTCCCTCGCCCGCCATTGCGATGCGGATGTGGAGCCGATG
GCGCTGCTGCGCCTGCGCCCTACGCCCTCGCAAGAAGGACGTTCCCGCGATGCGCGGTATCAGAACGTGGATGAGGCGAT
TATTCCCCATCCCCGCAAAGGGTCTGCCATCAAAGGTCGCAACGTGGTGCTGATCGACGACGTGATGACCTCTGGCGCAA
CGCTTGCAATCGCAACGGATGCCTGTCGCCGGGCCGGTGCCGAAAATGTGTCCGTTTTGGCTCTGGCGCGTGTCGGGGAC
GATATCTAG

Upstream 100 bases:

>100_bases
GAGCGGCAAGCGCTCTGGCATCGGTCAGACGGGGCTGAGACTGTTGCAAATGAAGGCTCCGGGTGGGGTGGTCGTCCTGC
GCGGTACTTAGGGGTCACGT

Downstream 100 bases:

>100_bases
ATTGGGCGGTATCGGACCCTTCAGAAAAGCGAATTCTCCATGGCCATCGTTACGCTCTATACCTCGCCGCTGTGCGGTTT
CTGCCACGCTGCCAAGCGGA

Product: competence protein F

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 242; Mature: 242

Protein sequence:

>242_residues
MRLQTMLHAVFPPECLNCSARVEDAFAICGSCWGDTPFILGAACDLCGTGLPGQTAAEGEALICGECQRVPRAWDHARAV
FSYEGVGRKLVLALKHGDRTDIARAAGPWMARAAADLLEDKPLLVPVPLHWTRLARRRFNQSALLAWSLARHCDADVEPM
ALLRLRPTPSQEGRSRDARYQNVDEAIIPHPRKGSAIKGRNVVLIDDVMTSGATLAIATDACRRAGAENVSVLALARVGD
DI

Sequences:

>Translated_242_residues
MRLQTMLHAVFPPECLNCSARVEDAFAICGSCWGDTPFILGAACDLCGTGLPGQTAAEGEALICGECQRVPRAWDHARAV
FSYEGVGRKLVLALKHGDRTDIARAAGPWMARAAADLLEDKPLLVPVPLHWTRLARRRFNQSALLAWSLARHCDADVEPM
ALLRLRPTPSQEGRSRDARYQNVDEAIIPHPRKGSAIKGRNVVLIDDVMTSGATLAIATDACRRAGAENVSVLALARVGD
DI
>Mature_242_residues
MRLQTMLHAVFPPECLNCSARVEDAFAICGSCWGDTPFILGAACDLCGTGLPGQTAAEGEALICGECQRVPRAWDHARAV
FSYEGVGRKLVLALKHGDRTDIARAAGPWMARAAADLLEDKPLLVPVPLHWTRLARRRFNQSALLAWSLARHCDADVEPM
ALLRLRPTPSQEGRSRDARYQNVDEAIIPHPRKGSAIKGRNVVLIDDVMTSGATLAIATDACRRAGAENVSVLALARVGD
DI

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=237, Percent_Identity=32.0675105485232, Blast_Score=72, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 26185; Mature: 26185

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS00103 PUR_PYR_PR_TRANSFER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.1 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
4.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRLQTMLHAVFPPECLNCSARVEDAFAICGSCWGDTPFILGAACDLCGTGLPGQTAAEGE
CCHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC
ALICGECQRVPRAWDHARAVFSYEGVGRKLVLALKHGDRTDIARAAGPWMARAAADLLED
EEEECCHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHCCHHHHHHHHHHHCC
KPLLVPVPLHWTRLARRRFNQSALLAWSLARHCDADVEPMALLRLRPTPSQEGRSRDARY
CCCEEECCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHH
QNVDEAIIPHPRKGSAIKGRNVVLIDDVMTSGATLAIATDACRRAGAENVSVLALARVGD
HCCCHHHCCCCCCCCCCCCCCEEEEECHHCCCCEEEEECHHHHHCCCCCCEEEEEECCCC
DI
CC
>Mature Secondary Structure
MRLQTMLHAVFPPECLNCSARVEDAFAICGSCWGDTPFILGAACDLCGTGLPGQTAAEGE
CCHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCC
ALICGECQRVPRAWDHARAVFSYEGVGRKLVLALKHGDRTDIARAAGPWMARAAADLLED
EEEECCHHHCCHHHHHHHHHHHHCCCCEEEEEEEECCCCHHHHHHCCHHHHHHHHHHHCC
KPLLVPVPLHWTRLARRRFNQSALLAWSLARHCDADVEPMALLRLRPTPSQEGRSRDARY
CCCEEECCHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCHH
QNVDEAIIPHPRKGSAIKGRNVVLIDDVMTSGATLAIATDACRRAGAENVSVLALARVGD
HCCCHHHCCCCCCCCCCCCCCEEEEECHHCCCCEEEEECHHHHHCCCCCCEEEEEECCCC
DI
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]