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The map label for this gene is radC

Identifier: 89052777

GI number: 89052777

Start: 291578

End: 292351

Strand: Direct

Name: radC

Synonym: Jann_0286

Alternate gene names: 89052777

Gene position: 291578-292351 (Clockwise)

Preceding gene: 89052776

Following gene: 89052781

Centisome position: 6.75

GC content: 61.76

Gene sequence:

>774_bases
ATGTCGGATCAGCCTGCGTTTACCTTCGATGAAGCCTCACCAGAGTTTGTGGATGCCACGCTGGTCGCACCGCGCAAGGC
GGGTGGCCCTTCCAAGGGGGCAGAGGCGCATCGCCACAAACATCGTGATCGCTTGCGGCAACGTTTTACGGACGGTGGCG
CAGATGCCGTGCCGGATTATGAGCTGCTGGAAATGGTCCTCTACGGGGCGATTCTGCGGGGCGACACAAAACCGCTCGCC
AAACGCCTGATTGATCGGTTCGGAGATCTGAACCGCGTTCTGGCCGCCCCCGTCGCCCGCCTGAAAGAGGTGGAGGGCGT
CGGCGACAAGGTCGTCTTCCAACTGAAGCTGATCGAAGCCACGGGTCACCGCATGGCCCGCGCCAAGGTGATGCAGAAGC
CGATCCTGTCATCATGGGACGCGCTGCTGGCGTATTGTCAGACGGCCATGGCCCACCGCGATCTGGAGCAGTTCCGCGTT
CTCTACCTCGACCGCAAGAACGTGCTTGTGGCCGACGAGGCGCAAGCCGATGGGACGGTGGACCACGTCCCAGTCTACCC
GCGGGAGGTCATCAAACGCGCGCTGGAACTCAATGCGACCGCCCTTATTCTGGTCCACAATCATCCCTCAGGCGATCCGA
CGCCGTCGGAGGCGGACGTGCAGATGACCATGGCGATCCGGGATGCGGCAGACGTCTTCAACATCGCCATCCATGACCAT
CTGGTGATCGGCAAAGCGCGGGAGTTGAGTTTCCGCGCGGAAGGTTACCTTTAG

Upstream 100 bases:

>100_bases
ATGTGATGTGTTATGCGGGCGCTCGTTAACCCGCCGTTTCAGTCAAGCTGGGTATCCATCGCTAACGATCCGTTAACCAT
TTGACGGCAAGCTTGTGGGC

Downstream 100 bases:

>100_bases
ACTGTCTTCATCCTGGAGGCGCTGCAAACCTTGGAGCCCTCAATCCACCCACACCTCGACCCGCCGGTTCACGGCACGGC
CCCAATCGGTGTCATCGCAG

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 256

Protein sequence:

>257_residues
MSDQPAFTFDEASPEFVDATLVAPRKAGGPSKGAEAHRHKHRDRLRQRFTDGGADAVPDYELLEMVLYGAILRGDTKPLA
KRLIDRFGDLNRVLAAPVARLKEVEGVGDKVVFQLKLIEATGHRMARAKVMQKPILSSWDALLAYCQTAMAHRDLEQFRV
LYLDRKNVLVADEAQADGTVDHVPVYPREVIKRALELNATALILVHNHPSGDPTPSEADVQMTMAIRDAADVFNIAIHDH
LVIGKARELSFRAEGYL

Sequences:

>Translated_257_residues
MSDQPAFTFDEASPEFVDATLVAPRKAGGPSKGAEAHRHKHRDRLRQRFTDGGADAVPDYELLEMVLYGAILRGDTKPLA
KRLIDRFGDLNRVLAAPVARLKEVEGVGDKVVFQLKLIEATGHRMARAKVMQKPILSSWDALLAYCQTAMAHRDLEQFRV
LYLDRKNVLVADEAQADGTVDHVPVYPREVIKRALELNATALILVHNHPSGDPTPSEADVQMTMAIRDAADVFNIAIHDH
LVIGKARELSFRAEGYL
>Mature_256_residues
SDQPAFTFDEASPEFVDATLVAPRKAGGPSKGAEAHRHKHRDRLRQRFTDGGADAVPDYELLEMVLYGAILRGDTKPLAK
RLIDRFGDLNRVLAAPVARLKEVEGVGDKVVFQLKLIEATGHRMARAKVMQKPILSSWDALLAYCQTAMAHRDLEQFRVL
YLDRKNVLVADEAQADGTVDHVPVYPREVIKRALELNATALILVHNHPSGDPTPSEADVQMTMAIRDAADVFNIAIHDHL
VIGKARELSFRAEGYL

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=212, Percent_Identity=32.0754716981132, Blast_Score=124, Evalue=4e-30,
Organism=Escherichia coli, GI2367100, Length=122, Percent_Identity=43.4426229508197, Blast_Score=107, Evalue=1e-24,
Organism=Escherichia coli, GI1788997, Length=113, Percent_Identity=43.3628318584071, Blast_Score=100, Evalue=7e-23,
Organism=Escherichia coli, GI1788312, Length=108, Percent_Identity=47.2222222222222, Blast_Score=100, Evalue=9e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 28522; Mature: 28391

Theoretical pI: Translated: 6.87; Mature: 6.87

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDQPAFTFDEASPEFVDATLVAPRKAGGPSKGAEAHRHKHRDRLRQRFTDGGADAVPDY
CCCCCCEEECCCCCCHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCH
ELLEMVLYGAILRGDTKPLAKRLIDRFGDLNRVLAAPVARLKEVEGVGDKVVFQLKLIEA
HHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHH
TGHRMARAKVMQKPILSSWDALLAYCQTAMAHRDLEQFRVLYLDRKNVLVADEAQADGTV
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCCC
DHVPVYPREVIKRALELNATALILVHNHPSGDPTPSEADVQMTMAIRDAADVFNIAIHDH
CCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCE
LVIGKARELSFRAEGYL
EEECCHHHCCCCCCCCC
>Mature Secondary Structure 
SDQPAFTFDEASPEFVDATLVAPRKAGGPSKGAEAHRHKHRDRLRQRFTDGGADAVPDY
CCCCCEEECCCCCCHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCH
ELLEMVLYGAILRGDTKPLAKRLIDRFGDLNRVLAAPVARLKEVEGVGDKVVFQLKLIEA
HHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEHH
TGHRMARAKVMQKPILSSWDALLAYCQTAMAHRDLEQFRVLYLDRKNVLVADEAQADGTV
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCEEEECCCCCCCCC
DHVPVYPREVIKRALELNATALILVHNHPSGDPTPSEADVQMTMAIRDAADVFNIAIHDH
CCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHCE
LVIGKARELSFRAEGYL
EEECCHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA