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The map label for this gene is dnaQ [H]

Identifier: 89052685

GI number: 89052685

Start: 185734

End: 186429

Strand: Reverse

Name: dnaQ [H]

Synonym: Jann_0194

Alternate gene names: 89052685

Gene position: 186429-185734 (Counterclockwise)

Preceding gene: 89052686

Following gene: 89052682

Centisome position: 4.32

GC content: 54.02

Gene sequence:

>696_bases
ATGCGTGAAATCGTCCTCGATACTGAAACGACCGGTCTTAACCCCTACGACATGCCGCGCCACCGTATCGTGGAGATCGG
TGCCGTAGAGATTTTCAATCAGGTGCCCACGGGCAAGACCTATCACCAATATATCCAGCCTGAGCGTGACATGCCGAAAG
AGGCGTTTGATGTTCATGGCATCGGTGAAGATTTTCTGGCTGATAAGCCCATTTTTGCAGATATCGCCCAGGATTTTCTT
GATTTCGTGGGTGGAGACCAGATGGTCATCCACAACGCTGAATTCGACATGCGCTTCCTAAATGCCGAGTTGGAATGGGC
CGGCAAGCACGCACTTCCCAACGATCAAGCGCTCGACACGCTGAAAATTGCTCGTCAAAAGTTCCCGGGTTCTCCCGCAT
CGCTTGATGCTTTGTGTCGCCGGTTTGGGATCGACAATTCAGCGCGGGAAAAGCACGGGGCCTTGCTCGATTCCGAGATT
TTGGCAGAGGTGTATCTGGAGCTGACAGGCGGCAAACAGCCGGACTTTGGTCTGTCCCAAAGCAAGTCAACACCGACCCA
GCAGCAGGATGAAAACTGGCGCCCGCGTCCACGCCCCAGCGCGCTACCAACCCGATTATCAGATGTCGAAAAGGCCGCTC
ATGCAGCCTTTGTCGATGCTTTGGGTGATCAAACCGTCTGGTCGAAATTCCGCTGA

Upstream 100 bases:

>100_bases
GCGTGCCCGCGCAACATATGTTATTGAGACGGATACGCTGGACGGCACCCGGCAAGACGTGGCACATCTGGTATCAAAGT
TGACTGAAGGCACATGATGA

Downstream 100 bases:

>100_bases
CTCAAGCGGTTCCAACAGGCTGTTGCGCCTGACGAGCGGCGATCTGCTGGCGATAGAGCGCTACAAAATCGATCTGATCC
AGGTTCAGCGGTGGGTATCC

Product: DNA polymerase III subunit epsilon

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MREIVLDTETTGLNPYDMPRHRIVEIGAVEIFNQVPTGKTYHQYIQPERDMPKEAFDVHGIGEDFLADKPIFADIAQDFL
DFVGGDQMVIHNAEFDMRFLNAELEWAGKHALPNDQALDTLKIARQKFPGSPASLDALCRRFGIDNSAREKHGALLDSEI
LAEVYLELTGGKQPDFGLSQSKSTPTQQQDENWRPRPRPSALPTRLSDVEKAAHAAFVDALGDQTVWSKFR

Sequences:

>Translated_231_residues
MREIVLDTETTGLNPYDMPRHRIVEIGAVEIFNQVPTGKTYHQYIQPERDMPKEAFDVHGIGEDFLADKPIFADIAQDFL
DFVGGDQMVIHNAEFDMRFLNAELEWAGKHALPNDQALDTLKIARQKFPGSPASLDALCRRFGIDNSAREKHGALLDSEI
LAEVYLELTGGKQPDFGLSQSKSTPTQQQDENWRPRPRPSALPTRLSDVEKAAHAAFVDALGDQTVWSKFR
>Mature_231_residues
MREIVLDTETTGLNPYDMPRHRIVEIGAVEIFNQVPTGKTYHQYIQPERDMPKEAFDVHGIGEDFLADKPIFADIAQDFL
DFVGGDQMVIHNAEFDMRFLNAELEWAGKHALPNDQALDTLKIARQKFPGSPASLDALCRRFGIDNSAREKHGALLDSEI
LAEVYLELTGGKQPDFGLSQSKSTPTQQQDENWRPRPRPSALPTRLSDVEKAAHAAFVDALGDQTVWSKFR

Specific function: DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease [H]

COG id: COG0847

COG function: function code L; DNA polymerase III, epsilon subunit and related 3'-5' exonucleases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786409, Length=238, Percent_Identity=45.3781512605042, Blast_Score=191, Evalue=4e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006054
- InterPro:   IPR006309
- InterPro:   IPR006055
- InterPro:   IPR013520
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00929 Exonuc_X-T [H]

EC number: =2.7.7.7 [H]

Molecular weight: Translated: 25976; Mature: 25976

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS00228 TUBULIN_B_AUTOREG

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MREIVLDTETTGLNPYDMPRHRIVEIGAVEIFNQVPTGKTYHQYIQPERDMPKEAFDVHG
CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHCCC
IGEDFLADKPIFADIAQDFLDFVGGDQMVIHNAEFDMRFLNAELEWAGKHALPNDQALDT
CCHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCHHHCCCCCCCCCCHHHHH
LKIARQKFPGSPASLDALCRRFGIDNSAREKHGALLDSEILAEVYLELTGGKQPDFGLSQ
HHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
SKSTPTQQQDENWRPRPRPSALPTRLSDVEKAAHAAFVDALGDQTVWSKFR
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCC
>Mature Secondary Structure
MREIVLDTETTGLNPYDMPRHRIVEIGAVEIFNQVPTGKTYHQYIQPERDMPKEAFDVHG
CCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHHHCCC
IGEDFLADKPIFADIAQDFLDFVGGDQMVIHNAEFDMRFLNAELEWAGKHALPNDQALDT
CCHHHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCEEEECCHHHCCCCCCCCCCHHHHH
LKIARQKFPGSPASLDALCRRFGIDNSAREKHGALLDSEILAEVYLELTGGKQPDFGLSQ
HHHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCC
SKSTPTQQQDENWRPRPRPSALPTRLSDVEKAAHAAFVDALGDQTVWSKFR
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA