Click here to switch to the map view.

The map label for this gene is pufA [H]

Identifier: 89052665

GI number: 89052665

Start: 167654

End: 167821

Strand: Reverse

Name: pufA [H]

Synonym: Jann_0174

Alternate gene names: 89052665

Gene position: 167821-167654 (Counterclockwise)

Preceding gene: 89052666

Following gene: 89052664

Centisome position: 3.89

GC content: 58.33

Gene sequence:

>168_bases
ATGGCTAAGTTCTACAAAGTCTGGCTCATCTTCGACCCCCGCCGCGTGTTCGTGGCGCAGGGCGTGTTCCTCTTCTTGCT
GGCAGCGATGATCCACCTGGTGGTTCTGTCGTCCGGCTTGAACTGGTTTGAGAACGCCGCAATGACCATGGGTTTCGGCG
GCGAGTGA

Upstream 100 bases:

>100_bases
CGGTGTATATGAGCGGGCTCTGGCTGTTTTCGGCCGTTGCCCTTGTCGCTCATATCGCCACGTACTTTTGGGCGCCCTGG
TTCTGAAGAGGGAATAGAGA

Downstream 100 bases:

>100_bases
GCCTCTGAATGCCCATGCCAAAGTGGCATCGACAACAGCTGCGGGCGGGGGCCTCACCCCTCTCGCCCGCAGCAAACACC
ACAAGAATTGACTGACGGCT

Product: antenna complex subunit alpha/beta

Products: NA

Alternate protein names: Antenna pigment protein alpha chain [H]

Number of amino acids: Translated: 55; Mature: 54

Protein sequence:

>55_residues
MAKFYKVWLIFDPRRVFVAQGVFLFLLAAMIHLVVLSSGLNWFENAAMTMGFGGE

Sequences:

>Translated_55_residues
MAKFYKVWLIFDPRRVFVAQGVFLFLLAAMIHLVVLSSGLNWFENAAMTMGFGGE
>Mature_54_residues
AKFYKVWLIFDPRRVFVAQGVFLFLLAAMIHLVVLSSGLNWFENAAMTMGFGGE

Specific function: Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the antena complex alpha subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000066
- InterPro:   IPR002361 [H]

Pfam domain/function: PF00556 LHC [H]

EC number: NA

Molecular weight: Translated: 6242; Mature: 6110

Theoretical pI: Translated: 9.26; Mature: 9.26

Prosite motif: PS00968 ANTENNA_COMP_ALPHA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
7.3 %Met     (Translated Protein)
7.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.6 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKFYKVWLIFDPRRVFVAQGVFLFLLAAMIHLVVLSSGLNWFENAAMTMGFGGE
CCCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEECCCCCC
>Mature Secondary Structure 
AKFYKVWLIFDPRRVFVAQGVFLFLLAAMIHLVVLSSGLNWFENAAMTMGFGGE
CCEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1787796 [H]