Click here to switch to the map view.

The map label for this gene is pufB [H]

Identifier: 89052666

GI number: 89052666

Start: 167836

End: 168018

Strand: Reverse

Name: pufB [H]

Synonym: Jann_0175

Alternate gene names: 89052666

Gene position: 168018-167836 (Counterclockwise)

Preceding gene: 89052667

Following gene: 89052665

Centisome position: 3.89

GC content: 55.19

Gene sequence:

>183_bases
TTGCGGCGTCAGTCTGACGTTCCGGAGGAAAATATGGCTGATAATTCCGACCTGTCTTTTACAGGTCTCACCGACGAGCA
GGCGCAAGAATTGCACGCGGTGTATATGAGCGGGCTCTGGCTGTTTTCGGCCGTTGCCCTTGTCGCTCATATCGCCACGT
ACTTTTGGGCGCCCTGGTTCTGA

Upstream 100 bases:

>100_bases
GACCGGAGCCGATACTGGGTTCATCTTTGGTGCGCATCCGCGCGTCTTTGATGGAATGCCGGCAGGGTAATGACGCCTTG
TCGGGGCCCGGCCGCAGGGT

Downstream 100 bases:

>100_bases
AGAGGGAATAGAGAATGGCTAAGTTCTACAAAGTCTGGCTCATCTTCGACCCCCGCCGCGTGTTCGTGGCGCAGGGCGTG
TTCCTCTTCTTGCTGGCAGC

Product: antenna complex subunit alpha/beta

Products: NA

Alternate protein names: Antenna pigment protein beta chain; LH-3A [H]

Number of amino acids: Translated: 60; Mature: 60

Protein sequence:

>60_residues
MRRQSDVPEENMADNSDLSFTGLTDEQAQELHAVYMSGLWLFSAVALVAHIATYFWAPWF

Sequences:

>Translated_60_residues
MRRQSDVPEENMADNSDLSFTGLTDEQAQELHAVYMSGLWLFSAVALVAHIATYFWAPWF
>Mature_60_residues
MRRQSDVPEENMADNSDLSFTGLTDEQAQELHAVYMSGLWLFSAVALVAHIATYFWAPWF

Specific function: Antenna complexes are light-harvesting systems, which transfer the excitation energy to the reaction centers [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the antena complex beta subunit family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000066
- InterPro:   IPR002362 [H]

Pfam domain/function: PF00556 LHC [H]

EC number: NA

Molecular weight: Translated: 6866; Mature: 6866

Theoretical pI: Translated: 4.06; Mature: 4.06

Prosite motif: PS00969 ANTENNA_COMP_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRRQSDVPEENMADNSDLSFTGLTDEQAQELHAVYMSGLWLFSAVALVAHIATYFWAPWF
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MRRQSDVPEENMADNSDLSFTGLTDEQAQELHAVYMSGLWLFSAVALVAHIATYFWAPWF
CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 3027044; 10648776 [H]