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The map label for this gene is pufC [H]

Identifier: 89052662

GI number: 89052662

Start: 164358

End: 165602

Strand: Reverse

Name: pufC [H]

Synonym: Jann_0171

Alternate gene names: 89052662

Gene position: 165602-164358 (Counterclockwise)

Preceding gene: 89052663

Following gene: 89052661

Centisome position: 3.84

GC content: 60.56

Gene sequence:

>1245_bases
ATGTTTCCCAAGTGGTTTGATAAGTGGAATGACGACAATCCCACTAACATCTTTGGCCCCGCGATAGCTGTTGGTGCCCT
GGGCGGCGCGGTCTTTGTCGCGGCTTTGATCGTGGGCTTTGGCCAACCCTATGCCACCGCGTCGATGCAGACGGGCCCCC
GCGGCACCGGCATGCATGTCGCGGAGTTTGAGGCGAGCCTGGCTGCCGGCGATCCCACGGTCATCGATTTCTACACCGAT
GAGCCTTTCGTTCCGGAAGAGGGGGAAGAGCTGGCGGGCGATATCTACGAGAACGTCCAGGTTCTGGGCGATCTCACCGA
TGCCAACTTCAACCGTCTGATGGGTGCGATCACCCAATGGGTCGCCCCGGAAGAGGGGTGTACCTACTGTCACGCCAATG
CGGCGGATGGGGAGTATGCGGATGATGACCTTTATACCAAGGTCGTGGCCCGCTCGATGTTGACGATGACGCGCAACATC
AACGTGAACTGGGATGCCCATGTGAACGCCAACTACGAAGTCGGCGTCACGTGCTACACCTGTCACCGCGGTCAGCCCGT
ACCAAACAACGTCTGGTTCCGCATCAGCCCGGTGAACGAGAATGCGGAAGGCTGGAGCGCGAACCAGAACCGCGCGACCA
TGGCGTCCAACTTCACGTCTCTGCCGTCGGACTATCTGGAACATTACCTGCTAGAGTCCGACGACGGTGGCTACAACATG
ATCGCGGTCCATGACCTCGACAGCCGCGTGCAGCAGCAGCCCGGTGATCCGCTGATCCAGCAGACCGAACGGACCTATGC
GTTCATGAACTACATCTCGAACTCTCTGGGGGTGAATTGCACGTTCTGCCACAATTCCCGCGCGTTCTACGATGGCGCTC
AGAACACGCCGCAATGGGGCACGGCATCGCTCGGCATCATCATGGTGCAAGAGATGATCGCAGAGCATCTGCTGCCGCTC
CAGGATGTGTACCCGGAAAACCGGCTCGGGCCGGTCTACGGCGACGCCCCCCTGGCCGCTTGCCGGACGTGTCACCAAGG
CTATCAGCAACCGATGCAGGGCCTGAACGTGATCGCGAACTGGCCTGAGTTGAACGTCCTAGAAGGCCCGCCGGACTATT
CAGCCTGGGAAGTTGCGGAGGCTGATCCGGAGCCGGAGGCCGCCGAGGCCGAAGACATGGATCCCGAGGCAGACGCGCCC
GAGGCCGATGAAGACCCGGAAGCTGAAGAAGAGGTTTCCGAGTGA

Upstream 100 bases:

>100_bases
GGAACACAACTTCGCACCCGACTATCTGGGCGCCTATGGCTACGAGGCCTACGGCTCTTACGAGGACTTCGGCGGCGTCA
CACGAGGGGAGGAGTAATCA

Downstream 100 bases:

>100_bases
CCCTGCTGGCGGCGACGGAGTAACTCCCGTCGCTGCTGCTTTTCCCGGGGGATGTCAGACCCCTCCGGCGCTACCCGGAA
TACGGTCGTTTCAGTCTCAA

Product: photosynthetic reaction center cytochrome c subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MFPKWFDKWNDDNPTNIFGPAIAVGALGGAVFVAALIVGFGQPYATASMQTGPRGTGMHVAEFEASLAAGDPTVIDFYTD
EPFVPEEGEELAGDIYENVQVLGDLTDANFNRLMGAITQWVAPEEGCTYCHANAADGEYADDDLYTKVVARSMLTMTRNI
NVNWDAHVNANYEVGVTCYTCHRGQPVPNNVWFRISPVNENAEGWSANQNRATMASNFTSLPSDYLEHYLLESDDGGYNM
IAVHDLDSRVQQQPGDPLIQQTERTYAFMNYISNSLGVNCTFCHNSRAFYDGAQNTPQWGTASLGIIMVQEMIAEHLLPL
QDVYPENRLGPVYGDAPLAACRTCHQGYQQPMQGLNVIANWPELNVLEGPPDYSAWEVAEADPEPEAAEAEDMDPEADAP
EADEDPEAEEEVSE

Sequences:

>Translated_414_residues
MFPKWFDKWNDDNPTNIFGPAIAVGALGGAVFVAALIVGFGQPYATASMQTGPRGTGMHVAEFEASLAAGDPTVIDFYTD
EPFVPEEGEELAGDIYENVQVLGDLTDANFNRLMGAITQWVAPEEGCTYCHANAADGEYADDDLYTKVVARSMLTMTRNI
NVNWDAHVNANYEVGVTCYTCHRGQPVPNNVWFRISPVNENAEGWSANQNRATMASNFTSLPSDYLEHYLLESDDGGYNM
IAVHDLDSRVQQQPGDPLIQQTERTYAFMNYISNSLGVNCTFCHNSRAFYDGAQNTPQWGTASLGIIMVQEMIAEHLLPL
QDVYPENRLGPVYGDAPLAACRTCHQGYQQPMQGLNVIANWPELNVLEGPPDYSAWEVAEADPEPEAAEAEDMDPEADAP
EADEDPEAEEEVSE
>Mature_414_residues
MFPKWFDKWNDDNPTNIFGPAIAVGALGGAVFVAALIVGFGQPYATASMQTGPRGTGMHVAEFEASLAAGDPTVIDFYTD
EPFVPEEGEELAGDIYENVQVLGDLTDANFNRLMGAITQWVAPEEGCTYCHANAADGEYADDDLYTKVVARSMLTMTRNI
NVNWDAHVNANYEVGVTCYTCHRGQPVPNNVWFRISPVNENAEGWSANQNRATMASNFTSLPSDYLEHYLLESDDGGYNM
IAVHDLDSRVQQQPGDPLIQQTERTYAFMNYISNSLGVNCTFCHNSRAFYDGAQNTPQWGTASLGIIMVQEMIAEHLLPL
QDVYPENRLGPVYGDAPLAACRTCHQGYQQPMQGLNVIANWPELNVLEGPPDYSAWEVAEADPEPEAAEAEDMDPEADAP
EADEDPEAEEEVSE

Specific function: The reaction center of purple bacteria contains a tightly bound cytochrome molecule which re-reduces the photo oxidized primary electron donor [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011031
- InterPro:   IPR023119
- InterPro:   IPR003158 [H]

Pfam domain/function: PF02276 CytoC_RC [H]

EC number: NA

Molecular weight: Translated: 45504; Mature: 45504

Theoretical pI: Translated: 3.77; Mature: 3.77

Prosite motif: PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPKWFDKWNDDNPTNIFGPAIAVGALGGAVFVAALIVGFGQPYATASMQTGPRGTGMHV
CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
AEFEASLAAGDPTVIDFYTDEPFVPEEGEELAGDIYENVQVLGDLTDANFNRLMGAITQW
HHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VAPEEGCTYCHANAADGEYADDDLYTKVVARSMLTMTRNINVNWDAHVNANYEVGVTCYT
CCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEE
CHRGQPVPNNVWFRISPVNENAEGWSANQNRATMASNFTSLPSDYLEHYLLESDDGGYNM
ECCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHEECCCCCCEEE
IAVHDLDSRVQQQPGDPLIQQTERTYAFMNYISNSLGVNCTFCHNSRAFYDGAQNTPQWG
EEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCCCCC
TASLGIIMVQEMIAEHLLPLQDVYPENRLGPVYGDAPLAACRTCHQGYQQPMQGLNVIAN
CHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEC
WPELNVLEGPPDYSAWEVAEADPEPEAAEAEDMDPEADAPEADEDPEAEEEVSE
CCCCEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC
>Mature Secondary Structure
MFPKWFDKWNDDNPTNIFGPAIAVGALGGAVFVAALIVGFGQPYATASMQTGPRGTGMHV
CCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCH
AEFEASLAAGDPTVIDFYTDEPFVPEEGEELAGDIYENVQVLGDLTDANFNRLMGAITQW
HHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VAPEEGCTYCHANAADGEYADDDLYTKVVARSMLTMTRNINVNWDAHVNANYEVGVTCYT
CCCCCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEEE
CHRGQPVPNNVWFRISPVNENAEGWSANQNRATMASNFTSLPSDYLEHYLLESDDGGYNM
ECCCCCCCCCEEEEEEECCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHEECCCCCCEEE
IAVHDLDSRVQQQPGDPLIQQTERTYAFMNYISNSLGVNCTFCHNSRAFYDGAQNTPQWG
EEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEEECCCCCCCCCC
TASLGIIMVQEMIAEHLLPLQDVYPENRLGPVYGDAPLAACRTCHQGYQQPMQGLNVIAN
CHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEEC
WPELNVLEGPPDYSAWEVAEADPEPEAAEAEDMDPEADAPEADEDPEAEEEVSE
CCCCEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9286973; 1787796 [H]