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The map label for this gene is ykfC [H]

Identifier: 89052596

GI number: 89052596

Start: 95737

End: 96573

Strand: Reverse

Name: ykfC [H]

Synonym: Jann_0105

Alternate gene names: 89052596

Gene position: 96573-95737 (Counterclockwise)

Preceding gene: 89052597

Following gene: 89052587

Centisome position: 2.24

GC content: 61.89

Gene sequence:

>837_bases
ATGACCGACCCCCGCACCACCGCATTCAACGGCCGTGTCGCCCATGCATCGCTGAAAGGCGAGATCGAGGCCGAGCGGTA
TTCGGAAGGCCGCTGGATGATGGTGCAACAGCCCATCGCCAACATCCTTGACAAACCCCGTGGCGCACGCACGTCGCAGC
TGGTGTTTGGAGAGCGGTTTCTGGTCCTCGACACCGAAGACGGGTTTTCCTTTGGCCAGGCCGAGCGGGACGGCTATGTC
GGCTACATCCTGTCGGGCGCATTGACGGGGGCGGAGCCTGCGACCCATTGGGTGATCTCCCCCGCCACGCACCTCTATCC
GAAGGCAGAGTTGAAGGTGCCGCCCGACGTCTGCCTCTACTTTGGCAGTCAGGTAAAGGTGACGGGGGAAAAGGATGACT
TTAAGCGCATCCACACCGGCCACTTCATGCCATCCCAGCACCTGATGCCGATCAAGGCGCGGTTCCGGGATTCGGTTGGC
ATTGCGGATCTGTTCCTGGGCACGCCCTATCTCTGGGGCGGCACCAGCAGGTGGGGCATCGATTGTTCTGGCCTCGTGCA
GGCGTGTTTGCTGGCCTGTGGCGTGGAGTGTCCGCGCGACACTGACCAGCAAGAAGCGGCGCTGGGGGAAGAGATCCCCT
CGGATGAGGCGTTGAAGCGCGGCGATCTGATTTTCTGGAAGGGCCATGTCGGGATGATGGCGAGTGACAGGATGCTGCTC
CATGCCAACGCCCATCACATGTCGACAGCCTATGAGCCCCTGAAAGACGCTGCCGCGCGGATTGAGGCGAAAGAATACGG
CCCCATCACCTCCCGCAAACGGATCGCCATGGGATAG

Upstream 100 bases:

>100_bases
TTTACGGCTGGCAGCGCACCACTGCGCCTGCCCGTCCCAAGGGTGGCGTGGGCCAAGGTATCCGCGCGATCTTTGACGCA
TTGCCCGAGGTTCTTTCCCG

Downstream 100 bases:

>100_bases
GGTCGGTCGCTAATCGACGACCCGGATCAGCTTCCGCTCCAACACGCGCAGGACGGTCTTCAGGTCATGCCCCCGTTTCA
GGATTCGTCCGTCAATGCCG

Product: NLP/P60

Products: NA

Alternate protein names: Cell wall endopeptidase ykfC [H]

Number of amino acids: Translated: 278; Mature: 277

Protein sequence:

>278_residues
MTDPRTTAFNGRVAHASLKGEIEAERYSEGRWMMVQQPIANILDKPRGARTSQLVFGERFLVLDTEDGFSFGQAERDGYV
GYILSGALTGAEPATHWVISPATHLYPKAELKVPPDVCLYFGSQVKVTGEKDDFKRIHTGHFMPSQHLMPIKARFRDSVG
IADLFLGTPYLWGGTSRWGIDCSGLVQACLLACGVECPRDTDQQEAALGEEIPSDEALKRGDLIFWKGHVGMMASDRMLL
HANAHHMSTAYEPLKDAAARIEAKEYGPITSRKRIAMG

Sequences:

>Translated_278_residues
MTDPRTTAFNGRVAHASLKGEIEAERYSEGRWMMVQQPIANILDKPRGARTSQLVFGERFLVLDTEDGFSFGQAERDGYV
GYILSGALTGAEPATHWVISPATHLYPKAELKVPPDVCLYFGSQVKVTGEKDDFKRIHTGHFMPSQHLMPIKARFRDSVG
IADLFLGTPYLWGGTSRWGIDCSGLVQACLLACGVECPRDTDQQEAALGEEIPSDEALKRGDLIFWKGHVGMMASDRMLL
HANAHHMSTAYEPLKDAAARIEAKEYGPITSRKRIAMG
>Mature_277_residues
TDPRTTAFNGRVAHASLKGEIEAERYSEGRWMMVQQPIANILDKPRGARTSQLVFGERFLVLDTEDGFSFGQAERDGYVG
YILSGALTGAEPATHWVISPATHLYPKAELKVPPDVCLYFGSQVKVTGEKDDFKRIHTGHFMPSQHLMPIKARFRDSVGI
ADLFLGTPYLWGGTSRWGIDCSGLVQACLLACGVECPRDTDQQEAALGEEIPSDEALKRGDLIFWKGHVGMMASDRMLLH
ANAHHMSTAYEPLKDAAARIEAKEYGPITSRKRIAMG

Specific function: Specifically hydrolyzes gamma-D-glutamyl-L-lysine bonds in murein peptides, releasing L-Ala-D-Glu [H]

COG id: COG0791

COG function: function code M; Cell wall-associated hydrolases (invasion-associated proteins)

Gene ontology:

Cell location: Attached To The Membrane By A Lipid Anchor [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpC/p60 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000064 [H]

Pfam domain/function: PF00877 NLPC_P60 [H]

EC number: NA

Molecular weight: Translated: 30711; Mature: 30580

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTDPRTTAFNGRVAHASLKGEIEAERYSEGRWMMVQQPIANILDKPRGARTSQLVFGERF
CCCCCCEECCCEEEEEECCCCEEHHCCCCCCEEEEHHHHHHHHCCCCCCCCCEEEECCEE
LVLDTEDGFSFGQAERDGYVGYILSGALTGAEPATHWVISPATHLYPKAELKVPPDVCLY
EEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCHHHCCCCCCCCCCHHHHEE
FGSQVKVTGEKDDFKRIHTGHFMPSQHLMPIKARFRDSVGIADLFLGTPYLWGGTSRWGI
ECCEEEEECCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCEEECCCCCCCC
DCSGLVQACLLACGVECPRDTDQQEAALGEEIPSDEALKRGDLIFWKGHVGMMASDRMLL
CHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHCCCEEEEECCCCEEECCCEEE
HANAHHMSTAYEPLKDAAARIEAKEYGPITSRKRIAMG
EECCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEECCC
>Mature Secondary Structure 
TDPRTTAFNGRVAHASLKGEIEAERYSEGRWMMVQQPIANILDKPRGARTSQLVFGERF
CCCCCEECCCEEEEEECCCCEEHHCCCCCCEEEEHHHHHHHHCCCCCCCCCEEEECCEE
LVLDTEDGFSFGQAERDGYVGYILSGALTGAEPATHWVISPATHLYPKAELKVPPDVCLY
EEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEECCHHHCCCCCCCCCCHHHHEE
FGSQVKVTGEKDDFKRIHTGHFMPSQHLMPIKARFRDSVGIADLFLGTPYLWGGTSRWGI
ECCEEEEECCCHHHHHHHCCCCCCCCCCCHHHHHHCCCCCHHHHHHCCCEEECCCCCCCC
DCSGLVQACLLACGVECPRDTDQQEAALGEEIPSDEALKRGDLIFWKGHVGMMASDRMLL
CHHHHHHHHHHHCCCCCCCCCCHHHHHHHCCCCCHHHHHCCCEEEEECCCCEEECCCEEE
HANAHHMSTAYEPLKDAAARIEAKEYGPITSRKRIAMG
EECCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]