| Definition | Jannaschia sp. CCS1 chromosome, complete genome. |
|---|---|
| Accession | NC_007802 |
| Length | 4,317,977 |
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The map label for this gene is ilvA [H]
Identifier: 89052560
GI number: 89052560
Start: 63420
End: 64697
Strand: Direct
Name: ilvA [H]
Synonym: Jann_0069
Alternate gene names: 89052560
Gene position: 63420-64697 (Clockwise)
Preceding gene: 89052559
Following gene: 89052562
Centisome position: 1.47
GC content: 60.09
Gene sequence:
>1278_bases TTGACCGCCGGGACGGGCCAAGCCGTTGGCATGACAGATTTTGCCATTGCCGCCAAAGCCACGACCGCCGCGCTCAGGGA CCTGTTCCCTGCCACGCCGCTGTTGAAAAACGCCTATCTGAGCGAGCGTTTTGGCGCGGACATTTGGCTGAAGCGCGAAG ATCTTAGCCCGGTCCGCTCCTACAAGTTGCGTGGTGCGTTCAACGCCATGCGCAAGGTGCGCGCGGAGCGGCCCGAATTG GTGGATTTCGTCTGTGCCAGCGCGGGCAATCACGCCCAGGGCGTGGCCTATGTCTGTGCCCATTTCGGCGTGCGCGGCAG GGTTTACATGCCGGTCACAACGCCTGATCAAAAGATTCTGAAAACGCGCACTTTCGGGGGCGATGCCGTAGAGATTGTGT TGGAAGGCGATTTCTTCGATGAAACCCAGGCCGCTGCGAAAGCCTATTGCGCAGAGGTCGGCGCCCATTTTCTGTCGCCC TTCGACGATCCGGATGTGATCGAGGGGCAAGCCTCCGTCGCGGTTGAGATGTTGGAGCAGTTGGGTCGCGCGCCCGATCA TCTGGTGCTGCCCGTAGGTGGCGGTGGCCTGTCGTCGGGCATGCTGTCCTACCTTCGGGACGTCGGGGCTGACACCCACG CAACGCTGGTGGAACCTGATGGCGGGCCTAGCCTCACCGCAGCCCTGAAGATCGGCGCGCCGCAAACCATCGAAATTACA GACACATTCGTGGATGGCGCCGCTGTGGCGCGCATAGGCAATCGCAACTTCGAGGTGCTGCGAAACGTCCCGCCCCGCGA CGTGCATCTTGTGTCTGAGAACAGAATTTGCGTGACAATTCAGGAGATGCTGAACCTGGAAGGCATCGTATTGGAACCCG CAGGCGCCCTGTCGGTGACGGTTCTGGACGAATTGCGCGGGCAGATCGCGGGCAAGACGGTGGTGTGTGTAACCTCTGGC GGAAACTTTGATTTCGAACGGTTGCCAGAGGTGAAGGAGCGGGCCCAGAAGTGGCAGGGACTGAAAAAGTATTTCATCCT GCGCCTGCCCCAACGGCCCGGAGCCTTGCGCGATTTCCTCGACCTCCTTGGGGAGGACGACAACATCACGCGGTTCGAGT ATCTCAAGAAGAACTCTCGCAACTTCGGATCGGTGCTGATCGGGATCGAATCCCATCGTGCCGCGAGCTTCCCAGAGCTG GAAGACCGCGTCGCCTCTCGCGGGTTTGGTTTCCGCGATATCACCGATGACCAAATTCTTGCGGATTTCCTGATCTAG
Upstream 100 bases:
>100_bases CGCTTGTGCTGATATGGATCCAATTGCTGGTGAACCTGGCGCTGATGACCACGCTTTACGGCAATCTGATCGAAGGACGT CAGTTGAACTGAGGCTGGAC
Downstream 100 bases:
>100_bases GCGGCCGCCAGTTCCGGGACATGCGGGGCGACTTCGCTCAGCGCGGCGGCGAACGCGGTGCGCACAGCCTCCACATCCGG GGGTTGGCTGGTATTGCAGG
Product: threonine dehydratase
Products: NA
Alternate protein names: Threonine deaminase [H]
Number of amino acids: Translated: 425; Mature: 424
Protein sequence:
>425_residues MTAGTGQAVGMTDFAIAAKATTAALRDLFPATPLLKNAYLSERFGADIWLKREDLSPVRSYKLRGAFNAMRKVRAERPEL VDFVCASAGNHAQGVAYVCAHFGVRGRVYMPVTTPDQKILKTRTFGGDAVEIVLEGDFFDETQAAAKAYCAEVGAHFLSP FDDPDVIEGQASVAVEMLEQLGRAPDHLVLPVGGGGLSSGMLSYLRDVGADTHATLVEPDGGPSLTAALKIGAPQTIEIT DTFVDGAAVARIGNRNFEVLRNVPPRDVHLVSENRICVTIQEMLNLEGIVLEPAGALSVTVLDELRGQIAGKTVVCVTSG GNFDFERLPEVKERAQKWQGLKKYFILRLPQRPGALRDFLDLLGEDDNITRFEYLKKNSRNFGSVLIGIESHRAASFPEL EDRVASRGFGFRDITDDQILADFLI
Sequences:
>Translated_425_residues MTAGTGQAVGMTDFAIAAKATTAALRDLFPATPLLKNAYLSERFGADIWLKREDLSPVRSYKLRGAFNAMRKVRAERPEL VDFVCASAGNHAQGVAYVCAHFGVRGRVYMPVTTPDQKILKTRTFGGDAVEIVLEGDFFDETQAAAKAYCAEVGAHFLSP FDDPDVIEGQASVAVEMLEQLGRAPDHLVLPVGGGGLSSGMLSYLRDVGADTHATLVEPDGGPSLTAALKIGAPQTIEIT DTFVDGAAVARIGNRNFEVLRNVPPRDVHLVSENRICVTIQEMLNLEGIVLEPAGALSVTVLDELRGQIAGKTVVCVTSG GNFDFERLPEVKERAQKWQGLKKYFILRLPQRPGALRDFLDLLGEDDNITRFEYLKKNSRNFGSVLIGIESHRAASFPEL EDRVASRGFGFRDITDDQILADFLI >Mature_424_residues TAGTGQAVGMTDFAIAAKATTAALRDLFPATPLLKNAYLSERFGADIWLKREDLSPVRSYKLRGAFNAMRKVRAERPELV DFVCASAGNHAQGVAYVCAHFGVRGRVYMPVTTPDQKILKTRTFGGDAVEIVLEGDFFDETQAAAKAYCAEVGAHFLSPF DDPDVIEGQASVAVEMLEQLGRAPDHLVLPVGGGGLSSGMLSYLRDVGADTHATLVEPDGGPSLTAALKIGAPQTIEITD TFVDGAAVARIGNRNFEVLRNVPPRDVHLVSENRICVTIQEMLNLEGIVLEPAGALSVTVLDELRGQIAGKTVVCVTSGG NFDFERLPEVKERAQKWQGLKKYFILRLPQRPGALRDFLDLLGEDDNITRFEYLKKNSRNFGSVLIGIESHRAASFPELE DRVASRGFGFRDITDDQILADFLI
Specific function: Catalyzes the formation of alpha-ketobutyrate from threonine in a two-step reaction. The first step is a dehydration of threonine, followed by rehydration and liberation of ammonia [H]
COG id: COG1171
COG function: function code E; Threonine dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serine/threonine dehydratase family [H]
Homologues:
Organism=Homo sapiens, GI11345492, Length=310, Percent_Identity=27.4193548387097, Blast_Score=107, Evalue=3e-23, Organism=Homo sapiens, GI33469958, Length=315, Percent_Identity=29.5238095238095, Blast_Score=81, Evalue=2e-15, Organism=Escherichia coli, GI1790207, Length=391, Percent_Identity=32.9923273657289, Blast_Score=175, Evalue=5e-45, Organism=Escherichia coli, GI1789505, Length=303, Percent_Identity=33.3333333333333, Blast_Score=142, Evalue=4e-35, Organism=Caenorhabditis elegans, GI71991565, Length=336, Percent_Identity=29.1666666666667, Blast_Score=124, Evalue=1e-28, Organism=Caenorhabditis elegans, GI17537387, Length=343, Percent_Identity=28.5714285714286, Blast_Score=103, Evalue=2e-22, Organism=Caenorhabditis elegans, GI17508781, Length=285, Percent_Identity=28.0701754385965, Blast_Score=102, Evalue=6e-22, Organism=Saccharomyces cerevisiae, GI6320930, Length=415, Percent_Identity=31.566265060241, Blast_Score=174, Evalue=2e-44, Organism=Saccharomyces cerevisiae, GI6322631, Length=304, Percent_Identity=30.2631578947368, Blast_Score=123, Evalue=5e-29, Organism=Saccharomyces cerevisiae, GI6319788, Length=287, Percent_Identity=26.8292682926829, Blast_Score=88, Evalue=2e-18, Organism=Drosophila melanogaster, GI21355833, Length=337, Percent_Identity=30.5637982195846, Blast_Score=107, Evalue=2e-23, Organism=Drosophila melanogaster, GI24645328, Length=259, Percent_Identity=30.5019305019305, Blast_Score=77, Evalue=2e-14,
Paralogues:
None
Copy number: 1344 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001926 - InterPro: IPR000634 - InterPro: IPR001721 - InterPro: IPR011820 [H]
Pfam domain/function: PF00291 PALP; PF00585 Thr_dehydrat_C [H]
EC number: =4.3.1.19 [H]
Molecular weight: Translated: 46213; Mature: 46082
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: PS00165 DEHYDRATASE_SER_THR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTAGTGQAVGMTDFAIAAKATTAALRDLFPATPLLKNAYLSERFGADIWLKREDLSPVRS CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHH YKLRGAFNAMRKVRAERPELVDFVCASAGNHAQGVAYVCAHFGVRGRVYMPVTTPDQKIL HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEECCCCHHHH KTRTFGGDAVEIVLEGDFFDETQAAAKAYCAEVGAHFLSPFDDPDVIEGQASVAVEMLEQ HEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH LGRAPDHLVLPVGGGGLSSGMLSYLRDVGADTHATLVEPDGGPSLTAALKIGAPQTIEIT HCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEECCCCEEEEE DTFVDGAAVARIGNRNFEVLRNVPPRDVHLVSENRICVTIQEMLNLEGIVLEPAGALSVT EHHHCCHHHHHHCCCCHHHHCCCCCCCEEEECCCCEEEEHHHHHCCCCEEECCCCCEEEH VLDELRGQIAGKTVVCVTSGGNFDFERLPEVKERAQKWQGLKKYFILRLPQRPGALRDFL HHHHHHHHHCCCEEEEEECCCCCCHHHCHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHH DLLGEDDNITRFEYLKKNSRNFGSVLIGIESHRAASFPELEDRVASRGFGFRDITDDQIL HHHCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCHHHH ADFLI HHHCC >Mature Secondary Structure TAGTGQAVGMTDFAIAAKATTAALRDLFPATPLLKNAYLSERFGADIWLKREDLSPVRS CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHH YKLRGAFNAMRKVRAERPELVDFVCASAGNHAQGVAYVCAHFGVRGRVYMPVTTPDQKIL HHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCEEEEEECCCCHHHH KTRTFGGDAVEIVLEGDFFDETQAAAKAYCAEVGAHFLSPFDDPDVIEGQASVAVEMLEQ HEECCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH LGRAPDHLVLPVGGGGLSSGMLSYLRDVGADTHATLVEPDGGPSLTAALKIGAPQTIEIT HCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEEEEECCCCEEEEE DTFVDGAAVARIGNRNFEVLRNVPPRDVHLVSENRICVTIQEMLNLEGIVLEPAGALSVT EHHHCCHHHHHHCCCCHHHHCCCCCCCEEEECCCCEEEEHHHHHCCCCEEECCCCCEEEH VLDELRGQIAGKTVVCVTSGGNFDFERLPEVKERAQKWQGLKKYFILRLPQRPGALRDFL HHHHHHHHHCCCEEEEEECCCCCCHHHCHHHHHHHHHHHHHHEEEEEECCCCCCHHHHHH DLLGEDDNITRFEYLKKNSRNFGSVLIGIESHRAASFPELEDRVASRGFGFRDITDDQIL HHHCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCHHHH ADFLI HHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9384377 [H]