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The map label for this gene is ycdC [C]

Identifier: 89052541

GI number: 89052541

Start: 45578

End: 46210

Strand: Reverse

Name: ycdC [C]

Synonym: Jann_0050

Alternate gene names: 89052541

Gene position: 46210-45578 (Counterclockwise)

Preceding gene: 89052546

Following gene: 89052534

Centisome position: 1.07

GC content: 58.29

Gene sequence:

>633_bases
ATGAACGCAGAAATGCAGATCAAGAAAGGTCGCAAGTTCGACCAGGTCATCGCCGGTGCGCGCGCCGTCTTCATGCGTGA
GGGGTTTGAAGGCGCATCCGTGGATGAGATCGCGCGCGATGCGGGCGTGTCCAAGGCCACGCTCTACAGCTACTTCCCCG
ATAAGCAGCATCTGTTTCTGGAGGTGCTTCGCCAGGAATGTGACGCCCAATCCGAGGTTGAGGTTCTGTTTCAGCAGACG
GGACTGAGCGTTGAAGAGAAGCTCTGCGTGATCTGCAAAAAGCTGATCACTTTCTTCGTCAGCGATTTTGGCCAGGACAT
GTTTCGTGTCTGCGTCGCCGAAGCCAAGCGCTTCCCGGAATTGGGCGAGACCTTCTACGCCAGCGGACCCAAACATTGGG
GCGAGAAAATCGCGGGCTTTCTGTGCAGCGACAAAGCCCGCGCGGTGCTGGATATCGAAGACCCGCTGTTGGCCGCCGAT
CAGCTGGCGCAACTGTGCCGCACAGATCTGATGCTGAAGGTCATGTTCGGGATCGAAAAGGATCCGGCTGAAGAAGAACT
GGACCGTATCGTGGACGAGGCCGTGCGGACATTCCTGGCCCGATATCGCCGTGTCCCCCGGGCGATGGGTTAG

Upstream 100 bases:

>100_bases
GCGTCCTGAACTGTCCAGCGGACCACCTGACCAAACGTCCAGCTTGCCGAAACTGAACTAAGCAGTTTACAATAGATGGC
AGGAGAGAGACGCCAACAAA

Downstream 100 bases:

>100_bases
GTCGCCGTAAACCGGTAATCCCGAGAAATATCGTCTTCCTGCATCCTAAGGTCCTGAACCTTGGTGGCTCGTAAGGCTTT
GGGCCAGAACGCGAGGCCCG

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: Transcriptional Regulator TetR Family; Transcriptional Regulator; Regulatory Protein TetR; Transcriptional Regulator TetR Family Protein; Transcription Regulator Protein; TetR-Family Transcriptional Regulator; Transcriptional Regulator Protein TetR Family; Transcriptional Regulator Tetr Family; TetR-Type Transcriptional Regulator; TetR/AcrR Family Transcriptional Regulator; TetR-Family Trancriptional Regulatory Protein; Bacterial Regulatory Protein TetR Family Protein; Transcriptional Regulator Protein; TetR Family Regulatory Protein; TetR-Like Virulence Regulator; Regulatory Protein Tetr; Transcriptional Regulator TetR; TetR Family Transcriptional Regulatory Protein; Bacterial Regulatory Protein; Transcriptional Regulator Protein Tetr Family

Number of amino acids: Translated: 210; Mature: 210

Protein sequence:

>210_residues
MNAEMQIKKGRKFDQVIAGARAVFMREGFEGASVDEIARDAGVSKATLYSYFPDKQHLFLEVLRQECDAQSEVEVLFQQT
GLSVEEKLCVICKKLITFFVSDFGQDMFRVCVAEAKRFPELGETFYASGPKHWGEKIAGFLCSDKARAVLDIEDPLLAAD
QLAQLCRTDLMLKVMFGIEKDPAEEELDRIVDEAVRTFLARYRRVPRAMG

Sequences:

>Translated_210_residues
MNAEMQIKKGRKFDQVIAGARAVFMREGFEGASVDEIARDAGVSKATLYSYFPDKQHLFLEVLRQECDAQSEVEVLFQQT
GLSVEEKLCVICKKLITFFVSDFGQDMFRVCVAEAKRFPELGETFYASGPKHWGEKIAGFLCSDKARAVLDIEDPLLAAD
QLAQLCRTDLMLKVMFGIEKDPAEEELDRIVDEAVRTFLARYRRVPRAMG
>Mature_210_residues
MNAEMQIKKGRKFDQVIAGARAVFMREGFEGASVDEIARDAGVSKATLYSYFPDKQHLFLEVLRQECDAQSEVEVLFQQT
GLSVEEKLCVICKKLITFFVSDFGQDMFRVCVAEAKRFPELGETFYASGPKHWGEKIAGFLCSDKARAVLDIEDPLLAAD
QLAQLCRTDLMLKVMFGIEKDPAEEELDRIVDEAVRTFLARYRRVPRAMG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23763; Mature: 23763

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: PS01081 HTH_TETR_1 ; PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
6.2 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
6.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAEMQIKKGRKFDQVIAGARAVFMREGFEGASVDEIARDAGVSKATLYSYFPDKQHLFL
CCCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHCCCHHHHHH
EVLRQECDAQSEVEVLFQQTGLSVEEKLCVICKKLITFFVSDFGQDMFRVCVAEAKRFPE
HHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
LGETFYASGPKHWGEKIAGFLCSDKARAVLDIEDPLLAADQLAQLCRTDLMLKVMFGIEK
HHHHHHCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
DPAEEELDRIVDEAVRTFLARYRRVPRAMG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MNAEMQIKKGRKFDQVIAGARAVFMREGFEGASVDEIARDAGVSKATLYSYFPDKQHLFL
CCCCCCHHCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCHHHHHHHCCCHHHHHH
EVLRQECDAQSEVEVLFQQTGLSVEEKLCVICKKLITFFVSDFGQDMFRVCVAEAKRFPE
HHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
LGETFYASGPKHWGEKIAGFLCSDKARAVLDIEDPLLAADQLAQLCRTDLMLKVMFGIEK
HHHHHHCCCCHHHHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
DPAEEELDRIVDEAVRTFLARYRRVPRAMG
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA