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The map label for this gene is yqgF [C]

Identifier: 88658457

GI number: 88658457

Start: 436874

End: 437344

Strand: Direct

Name: yqgF [C]

Synonym: ECH_0460

Alternate gene names: 88658457

Gene position: 436874-437344 (Clockwise)

Preceding gene: 88658153

Following gene: 88658077

Centisome position: 37.14

GC content: 29.72

Gene sequence:

>471_bases
ATGTTGTATAAAAATGTTGATGAATTTATAAAGGTTATAGATAAGACAAAAAGAATAATGGGTTTAGATTTTGGAGAGAA
AAAGATAGGGATAGCGTTAAGTGATAGAACAAATTTAATAGCAATACCTTACAGTGTGTATGTTAGAAGAAGCAGTAGAA
AAGATTTAGGTAGCTTATATAGTATTTTTGTAGAGAATGATGTAGGGTCGATAGTTATAGGTTGGCCGCTTGAATTGAGT
GGTGTAGAAAACGAATTGTGTCAGAAGGTAGTGATGTTTGCAAATCGGATTATAACAAGATATAAAATTAATATTTGTTT
ACATGATGAGAGGTATAGCACTGCTATGGCTACAAGGCTAGCAAAATTAGCTAATATTAAAAGAAAAGAATCTCAAGCAA
TTGATGATAAAATTTCAGCTGTATTAATTTTACAACAAGTGCTTGATATAATAAAAGTTTATCAAATGTAG

Upstream 100 bases:

>100_bases
ATATCAATAATATCGGGTCATAATTGGTTTGTTATATGTTGCGGTAATGTTTAGCAATATATGTACTGACGCATAATATT
CTAGAATGAATGGAAGTGGT

Downstream 100 bases:

>100_bases
AAAAGTAGTATCAATATTTTACAGGTGGATATTGTAAATGTGGTGACCACTCTATTAGAGATGATGCTGTATACCTATAT
ATAGGATATAAGGTAATAAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MLYKNVDEFIKVIDKTKRIMGLDFGEKKIGIALSDRTNLIAIPYSVYVRRSSRKDLGSLYSIFVENDVGSIVIGWPLELS
GVENELCQKVVMFANRIITRYKINICLHDERYSTAMATRLAKLANIKRKESQAIDDKISAVLILQQVLDIIKVYQM

Sequences:

>Translated_156_residues
MLYKNVDEFIKVIDKTKRIMGLDFGEKKIGIALSDRTNLIAIPYSVYVRRSSRKDLGSLYSIFVENDVGSIVIGWPLELS
GVENELCQKVVMFANRIITRYKINICLHDERYSTAMATRLAKLANIKRKESQAIDDKISAVLILQQVLDIIKVYQM
>Mature_156_residues
MLYKNVDEFIKVIDKTKRIMGLDFGEKKIGIALSDRTNLIAIPYSVYVRRSSRKDLGSLYSIFVENDVGSIVIGWPLELS
GVENELCQKVVMFANRIITRYKINICLHDERYSTAMATRLAKLANIKRKESQAIDDKISAVLILQQVLDIIKVYQM

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family

Homologues:

Organism=Escherichia coli, GI1789318, Length=131, Percent_Identity=30.5343511450382, Blast_Score=67, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RUVX_EHRCR (Q2GH06)

Other databases:

- EMBL:   CP000236
- RefSeq:   YP_507277.1
- ProteinModelPortal:   Q2GH06
- SMR:   Q2GH06
- STRING:   Q2GH06
- GeneID:   3927095
- GenomeReviews:   CP000236_GR
- KEGG:   ech:ECH_0460
- TIGR:   ECH_0460
- eggNOG:   COG0816
- HOGENOM:   HBG607919
- OMA:   ERSIAMP
- PhylomeDB:   Q2GH06
- ProtClustDB:   CLSK749487
- BioCyc:   ECHA205920:ECH_0460-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00651
- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337
- Gene3D:   G3DSA:3.30.420.140
- SMART:   SM00732
- TIGRFAMs:   TIGR00250

Pfam domain/function: PF03652 UPF0081; SSF53098 RNaseH_fold

EC number: NA

Molecular weight: Translated: 17860; Mature: 17860

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLYKNVDEFIKVIDKTKRIMGLDFGEKKIGIALSDRTNLIAIPYSVYVRRSSRKDLGSLY
CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECHHEEEECCCCHHHHHHH
SIFVENDVGSIVIGWPLELSGVENELCQKVVMFANRIITRYKINICLHDERYSTAMATRL
HHHEECCCCCEEEECCEEECCCHHHHHHHHHHHHHHHHHEEEEEEEEECCHHHHHHHHHH
AKLANIKRKESQAIDDKISAVLILQQVLDIIKVYQM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MLYKNVDEFIKVIDKTKRIMGLDFGEKKIGIALSDRTNLIAIPYSVYVRRSSRKDLGSLY
CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCEEEECHHEEEECCCCHHHHHHH
SIFVENDVGSIVIGWPLELSGVENELCQKVVMFANRIITRYKINICLHDERYSTAMATRL
HHHEECCCCCEEEECCEEECCCHHHHHHHHHHHHHHHHHEEEEEEEEECCHHHHHHHHHH
AKLANIKRKESQAIDDKISAVLILQQVLDIIKVYQM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA