| Definition | Ehrlichia chaffeensis str. Arkansas, complete genome. |
|---|---|
| Accession | NC_007799 |
| Length | 1,176,248 |
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The map label for this gene is dnaG [H]
Identifier: 88658374
GI number: 88658374
Start: 768508
End: 770274
Strand: Reverse
Name: dnaG [H]
Synonym: ECH_0761
Alternate gene names: 88658374
Gene position: 770274-768508 (Counterclockwise)
Preceding gene: 88657760
Following gene: 88657607
Centisome position: 65.49
GC content: 29.71
Gene sequence:
>1767_bases ATGAATGTTATTGATATTATCAAGAGTAAAATAAAGTTATCTGATGTAGTTGGACAAAGAGTTAAGCTAACTAAAAGGGG TAATAGTGTTATTGGACTATGTCCGTTTCATGGTGAAAAGACGCCATCTTTTACTGTGAATGATGAAAAAGGATTATATT ACTGTTTTGGTTGTGGGGCAAATGGTGATGTTATACAGTTTACTTCTGATATTAATGCTTTGGATTTTAAGGGTGCAATA AATTACTTGGCAGAGATATATGGTATTGATTTGCCACAAAGTACTAATAATAAGACAAGTATAACTCCTATATTGGATGC TGCAACATTATGGTTTGAAGAACAATTACGTAATAATCATGTGGCAATAGAATATATAAGGAGTCGCAAAATTTCTAATG ATACAGTAAAAAAATTTAGGATGGGGTATGCTCCAACATATGGTTTGGGTAAATATTTATTATCTTTAGGATTTAATATA GATGATATTAAAAATACAGGATTATTAAATTCTCAAAATCAAGATTATTTCTACAATAGGGTTATCTTTCCTATTTGTAA TTCTAGTGGAAATATTATAGGGTTTGGTGGTCGATCAATTATTAGTACACAGAACCCTAAATATTTGAATTCTAAGGGAA GTGCTTTTTTTCAAAAAAGAGAAAATCTATATGCATCGCATTTTGCCGTGCGTGAAGCAAAAAAGCAGGGGAAAATTATA GTGGTAGAAGGATATATGGATGTTCTAATGCTACATCAAATGGGTATTAGCAATGTAGTTGGATTACTGGGAACATCAAT GACTTCTGAGCATGTAATGTATTTGTGGGAAATAACTTCGGAAATTATAGTGTGGATGGATGGTGATATTGCTGGGAAAA TGGCTTCTATTAAATCCGCATCTCTTGCATTATCTTTAATTAGACCTGGATGCATAATAAAATTTGTTGATGTTTTTACA GGAAAGGATCCTTATGATATTTGTATAAATGATGGTGTTGATAGTGTAATTGCTTTGTTGGATAGTGCAAAATTACTATC AGAGTTTATTTGGGATTATGAACTTGCTAGGGTTAATGTTAATAAGAATTCTATTATGCCTGAACAGTGTGTCATGTTAG AAGCAAGAATTAAGCATTATCTTAGCCAGATTAGCGATAATAACGTTGTAAAATATTATAAAAAGTATTTTTATTCTCAA ATCCGTAATTTGCAGTATTCAAAAGATAAAAGTAAATTTTTGAGTACTGATAATCCGGTGAGTAAGGTAGATAATAGATT AAAATATGTGAGTGATGAATTTTTTTTGGAAGAGTATAATCAATTGAGAGTGGTATACGTGATTATGGAATTTCCAGAAC TGCTTGACGATCCGATTATTTTTGATCAATTTTCTAAATTTAATATAAGTGATAAGAATATATATGTATTGCAGCAGAAT ATTATTAATATAAAAGTTACTTTATGTAATCATGTTATATCTAAGGAGGTCTTACTTTCAGAATTAAAGAAAAATAATTT AGATGAGATAGTAAATTTTGTTATCAAAAGAATGTCTACATCTAATTTTATGGTATTACAAGATAGAGAATATAGTGTAG ATGTATCAAAGAAAGAGATAGAAAAAATAATGCTTTTAGATCACTTGCAATGTATTCAGAAGGAGATATTAGATTTACGC TTGAAGGGGCAAAGGGATCTTGCAGAAAGACTATCTAATCAAGCACAGGAAATAGATAATAGATTAAGAGAATTATGGAA TTATTAA
Upstream 100 bases:
>100_bases GTAATAACCTTCTATGATTGTATAATAAATTATGGCTCTATTTATTATAAGAAGTAATATGCTTTATTATTAGAAGAATC AGGCTGTCTATAGTTGTGAC
Downstream 100 bases:
>100_bases GAATGAGAGGTAGTTATGAGGTATTGCGTATTTTATAACTTAATGCTCTTAGACTGAGGATACAGATAGTTTTTTTTATT AACTCATGTGTTTTTATGTG
Product: DNA primase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 588; Mature: 588
Protein sequence:
>588_residues MNVIDIIKSKIKLSDVVGQRVKLTKRGNSVIGLCPFHGEKTPSFTVNDEKGLYYCFGCGANGDVIQFTSDINALDFKGAI NYLAEIYGIDLPQSTNNKTSITPILDAATLWFEEQLRNNHVAIEYIRSRKISNDTVKKFRMGYAPTYGLGKYLLSLGFNI DDIKNTGLLNSQNQDYFYNRVIFPICNSSGNIIGFGGRSIISTQNPKYLNSKGSAFFQKRENLYASHFAVREAKKQGKII VVEGYMDVLMLHQMGISNVVGLLGTSMTSEHVMYLWEITSEIIVWMDGDIAGKMASIKSASLALSLIRPGCIIKFVDVFT GKDPYDICINDGVDSVIALLDSAKLLSEFIWDYELARVNVNKNSIMPEQCVMLEARIKHYLSQISDNNVVKYYKKYFYSQ IRNLQYSKDKSKFLSTDNPVSKVDNRLKYVSDEFFLEEYNQLRVVYVIMEFPELLDDPIIFDQFSKFNISDKNIYVLQQN IINIKVTLCNHVISKEVLLSELKKNNLDEIVNFVIKRMSTSNFMVLQDREYSVDVSKKEIEKIMLLDHLQCIQKEILDLR LKGQRDLAERLSNQAQEIDNRLRELWNY
Sequences:
>Translated_588_residues MNVIDIIKSKIKLSDVVGQRVKLTKRGNSVIGLCPFHGEKTPSFTVNDEKGLYYCFGCGANGDVIQFTSDINALDFKGAI NYLAEIYGIDLPQSTNNKTSITPILDAATLWFEEQLRNNHVAIEYIRSRKISNDTVKKFRMGYAPTYGLGKYLLSLGFNI DDIKNTGLLNSQNQDYFYNRVIFPICNSSGNIIGFGGRSIISTQNPKYLNSKGSAFFQKRENLYASHFAVREAKKQGKII VVEGYMDVLMLHQMGISNVVGLLGTSMTSEHVMYLWEITSEIIVWMDGDIAGKMASIKSASLALSLIRPGCIIKFVDVFT GKDPYDICINDGVDSVIALLDSAKLLSEFIWDYELARVNVNKNSIMPEQCVMLEARIKHYLSQISDNNVVKYYKKYFYSQ IRNLQYSKDKSKFLSTDNPVSKVDNRLKYVSDEFFLEEYNQLRVVYVIMEFPELLDDPIIFDQFSKFNISDKNIYVLQQN IINIKVTLCNHVISKEVLLSELKKNNLDEIVNFVIKRMSTSNFMVLQDREYSVDVSKKEIEKIMLLDHLQCIQKEILDLR LKGQRDLAERLSNQAQEIDNRLRELWNY >Mature_588_residues MNVIDIIKSKIKLSDVVGQRVKLTKRGNSVIGLCPFHGEKTPSFTVNDEKGLYYCFGCGANGDVIQFTSDINALDFKGAI NYLAEIYGIDLPQSTNNKTSITPILDAATLWFEEQLRNNHVAIEYIRSRKISNDTVKKFRMGYAPTYGLGKYLLSLGFNI DDIKNTGLLNSQNQDYFYNRVIFPICNSSGNIIGFGGRSIISTQNPKYLNSKGSAFFQKRENLYASHFAVREAKKQGKII VVEGYMDVLMLHQMGISNVVGLLGTSMTSEHVMYLWEITSEIIVWMDGDIAGKMASIKSASLALSLIRPGCIIKFVDVFT GKDPYDICINDGVDSVIALLDSAKLLSEFIWDYELARVNVNKNSIMPEQCVMLEARIKHYLSQISDNNVVKYYKKYFYSQ IRNLQYSKDKSKFLSTDNPVSKVDNRLKYVSDEFFLEEYNQLRVVYVIMEFPELLDDPIIFDQFSKFNISDKNIYVLQQN IINIKVTLCNHVISKEVLLSELKKNNLDEIVNFVIKRMSTSNFMVLQDREYSVDVSKKEIEKIMLLDHLQCIQKEILDLR LKGQRDLAERLSNQAQEIDNRLRELWNY
Specific function: DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments on both template strands at replication forks during chromosomal DNA synthesis [H]
COG id: COG0358
COG function: function code L; DNA primase (bacterial type)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
Organism=Escherichia coli, GI1789447, Length=410, Percent_Identity=30.9756097560976, Blast_Score=224, Evalue=1e-59,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013264 - InterPro: IPR006295 - InterPro: IPR006171 - InterPro: IPR002694 [H]
Pfam domain/function: PF01751 Toprim; PF08275 Toprim_N; PF01807 zf-CHC2 [H]
EC number: 2.7.7.- [C]
Molecular weight: Translated: 67359; Mature: 67359
Theoretical pI: Translated: 7.70; Mature: 7.70
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNVIDIIKSKIKLSDVVGQRVKLTKRGNSVIGLCPFHGEKTPSFTVNDEKGLYYCFGCGA CCHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCCEEECCCCCEEEEEECCC NGDVIQFTSDINALDFKGAINYLAEIYGIDLPQSTNNKTSITPILDAATLWFEEQLRNNH CCCEEEEECCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC VAIEYIRSRKISNDTVKKFRMGYAPTYGLGKYLLSLGFNIDDIKNTGLLNSQNQDYFYNR EEEEEHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEEEE VIFPICNSSGNIIGFGGRSIISTQNPKYLNSKGSAFFQKRENLYASHFAVREAKKQGKII EEEEEECCCCCEEEECCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEE VVEGYMDVLMLHQMGISNVVGLLGTSMTSEHVMYLWEITSEIIVWMDGDIAGKMASIKSA EEECHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHEEECCEEEEEECCCCCCHHHHHHHH SLALSLIRPGCIIKFVDVFTGKDPYDICINDGVDSVIALLDSAKLLSEFIWDYELARVNV HHHHHHHCCCHHEEEEHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEEEC NKNSIMPEQCVMLEARIKHYLSQISDNNVVKYYKKYFYSQIRNLQYSKDKSKFLSTDNPV CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCH SKVDNRLKYVSDEFFLEEYNQLRVVYVIMEFPELLDDPIIFDQFSKFNISDKNIYVLQQN HHHHHHHHHHHHHHHHHHHCCEEEEEEEEHHHHHHCCCEEECCCCCCCCCCCEEEEEEEC IINIKVTLCNHVISKEVLLSELKKNNLDEIVNFVIKRMSTSNFMVLQDREYSVDVSKKEI CEEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHH EKIMLLDHLQCIQKEILDLRLKGQRDLAERLSNQAQEIDNRLRELWNY HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNVIDIIKSKIKLSDVVGQRVKLTKRGNSVIGLCPFHGEKTPSFTVNDEKGLYYCFGCGA CCHHHHHHHHHHHHHHHCCCEEEEECCCCEEEEECCCCCCCCCEEECCCCCEEEEEECCC NGDVIQFTSDINALDFKGAINYLAEIYGIDLPQSTNNKTSITPILDAATLWFEEQLRNNH CCCEEEEECCCCCEEHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC VAIEYIRSRKISNDTVKKFRMGYAPTYGLGKYLLSLGFNIDDIKNTGLLNSQNQDYFYNR EEEEEHHHCCCCHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHCCCCCCCCCCCCCEEEEE VIFPICNSSGNIIGFGGRSIISTQNPKYLNSKGSAFFQKRENLYASHFAVREAKKQGKII EEEEEECCCCCEEEECCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEE VVEGYMDVLMLHQMGISNVVGLLGTSMTSEHVMYLWEITSEIIVWMDGDIAGKMASIKSA EEECHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHEEECCEEEEEECCCCCCHHHHHHHH SLALSLIRPGCIIKFVDVFTGKDPYDICINDGVDSVIALLDSAKLLSEFIWDYELARVNV HHHHHHHCCCHHEEEEHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEEEC NKNSIMPEQCVMLEARIKHYLSQISDNNVVKYYKKYFYSQIRNLQYSKDKSKFLSTDNPV CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCH SKVDNRLKYVSDEFFLEEYNQLRVVYVIMEFPELLDDPIIFDQFSKFNISDKNIYVLQQN HHHHHHHHHHHHHHHHHHHCCEEEEEEEEHHHHHHCCCEEECCCCCCCCCCCEEEEEEEC IINIKVTLCNHVISKEVLLSELKKNNLDEIVNFVIKRMSTSNFMVLQDREYSVDVSKKEI CEEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHH EKIMLLDHLQCIQKEILDLRLKGQRDLAERLSNQAQEIDNRLRELWNY HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferring phosphorus-containing groups; Nucleotidyltransferases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA