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The map label for this gene is 88658347

Identifier: 88658347

GI number: 88658347

Start: 669521

End: 670114

Strand: Reverse

Name: 88658347

Synonym: ECH_0654

Alternate gene names: NA

Gene position: 670114-669521 (Counterclockwise)

Preceding gene: 88657896

Following gene: 88658185

Centisome position: 56.97

GC content: 27.27

Gene sequence:

>594_bases
ATGAACATACTTATTACTGCTAGAGGCTTTGACATTACTGATAACATTAAAGATTACATTGAGGAAGCCATAAAAAAACA
CACAACAAAATTTTTTATAGATGATTCAACAGTTAATATAAAAATGATCTTATCTAAAGATGGAAACCTGTTTAATTCTA
CCATTGGTATTAGTGATGTCAAGAGTGAATTTATTAGGATTTCTAAAACATCAGATACAGCATATAATGCAATAGATGAT
GCTGTTAGTCATTTGTGTGGTAAATTACAAAAACATAAAGGTGAAAGAATTAATAAATATCGTCATAATAAAAATTCTGT
AAAAGCACAGATGAGATGTTTTGGATATGTATTAGATAGTAATGAAATAGAAAAATATGATGTTAATAACATAAGTGATT
CAGGATTGATAATAGAGGAAGATGTTTTTGTAAAGACTATGACTATTGGGGATGCAATTATGGAAATGGAGTTATTATCT
TTACCGGCTTTTTTATTTATTAATGCCAAGAGTAATAGAATTAATATGATATATGCTAAAAGTGATGGTAATATAATGTG
GGTAGATCCACTGAATATATCTCCGATTAAATAA

Upstream 100 bases:

>100_bases
TGATTACAACGCTGTATTATATCAAAGTGATATGATGATGTATAGTAAATTTTTAGGGTTTTAGTGTATTAATTGTTAAT
ATAATTTTTAAAACATAGCT

Downstream 100 bases:

>100_bases
ATTTGTTTTATTATTTTAATATATGATGTATTATACTTTATAAAGAAATTAATATATTTATTAATACAGTAACGATAAAT
TTAATATTTTGTTATTCATA

Product: putative ribosomal subunit interface protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 197; Mature: 197

Protein sequence:

>197_residues
MNILITARGFDITDNIKDYIEEAIKKHTTKFFIDDSTVNIKMILSKDGNLFNSTIGISDVKSEFIRISKTSDTAYNAIDD
AVSHLCGKLQKHKGERINKYRHNKNSVKAQMRCFGYVLDSNEIEKYDVNNISDSGLIIEEDVFVKTMTIGDAIMEMELLS
LPAFLFINAKSNRINMIYAKSDGNIMWVDPLNISPIK

Sequences:

>Translated_197_residues
MNILITARGFDITDNIKDYIEEAIKKHTTKFFIDDSTVNIKMILSKDGNLFNSTIGISDVKSEFIRISKTSDTAYNAIDD
AVSHLCGKLQKHKGERINKYRHNKNSVKAQMRCFGYVLDSNEIEKYDVNNISDSGLIIEEDVFVKTMTIGDAIMEMELLS
LPAFLFINAKSNRINMIYAKSDGNIMWVDPLNISPIK
>Mature_197_residues
MNILITARGFDITDNIKDYIEEAIKKHTTKFFIDDSTVNIKMILSKDGNLFNSTIGISDVKSEFIRISKTSDTAYNAIDD
AVSHLCGKLQKHKGERINKYRHNKNSVKAQMRCFGYVLDSNEIEKYDVNNISDSGLIIEEDVFVKTMTIGDAIMEMELLS
LPAFLFINAKSNRINMIYAKSDGNIMWVDPLNISPIK

Specific function: Probably modulates the activity of sigma(54) (rpoN) [H]

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 22354; Mature: 22354

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILITARGFDITDNIKDYIEEAIKKHTTKFFIDDSTVNIKMILSKDGNLFNSTIGISDV
CEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCEEEEEEEEECCCCEEECCCCHHHH
KSEFIRISKTSDTAYNAIDDAVSHLCGKLQKHKGERINKYRHNKNSVKAQMRCFGYVLDS
HHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHEEEEEEEEECC
NEIEKYDVNNISDSGLIIEEDVFVKTMTIGDAIMEMELLSLPAFLFINAKSNRINMIYAK
CCCCEEECCCCCCCCEEEECCEEEEEEEHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEE
SDGNIMWVDPLNISPIK
CCCCEEEECCCCCCCCC
>Mature Secondary Structure
MNILITARGFDITDNIKDYIEEAIKKHTTKFFIDDSTVNIKMILSKDGNLFNSTIGISDV
CEEEEEECCCCCCHHHHHHHHHHHHHCCEEEEEECCEEEEEEEEECCCCEEECCCCHHHH
KSEFIRISKTSDTAYNAIDDAVSHLCGKLQKHKGERINKYRHNKNSVKAQMRCFGYVLDS
HHHHEEEECCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCCHHHHHEEEEEEEEECC
NEIEKYDVNNISDSGLIIEEDVFVKTMTIGDAIMEMELLSLPAFLFINAKSNRINMIYAK
CCCCEEECCCCCCCCEEEECCEEEEEEEHHHHHHHHHHHCCCEEEEEECCCCEEEEEEEE
SDGNIMWVDPLNISPIK
CCCCEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11481430; 3034856 [H]