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The map label for this gene is sodB [H]

Identifier: 88658263

GI number: 88658263

Start: 480037

End: 480654

Strand: Direct

Name: sodB [H]

Synonym: ECH_0493

Alternate gene names: 88658263

Gene position: 480037-480654 (Clockwise)

Preceding gene: 88657773

Following gene: 88657764

Centisome position: 40.81

GC content: 30.91

Gene sequence:

>618_bases
ATGTTTACTTTACCGGAACTTCCATATCAACAAGATGATTTAGTGCCATATTTAAGTCTTGAAATATTAGGGTATCATTA
TAATAAGCATCATCAGGGTTATGTTAATACTTTGAATACTCTTGTTACAGGTACAGATTTTAGTAAGTGTACTAATGAGG
ATTTACCAAAAGTTATTGAGGTTACATCTGGAGATTTAGGATCTAGAGCTATATTTAATAATGCTGGTCAAGTATGGAAT
CATAATTTTTACTGGGAATCTATGAAGAAAAATGGTGGAGGATCTCCTACAGGAAAATTATTAGATAAAATAAATGAGGA
TTTTGGGAGCATGGATGGTTTTAATAATGCTTTTATTAATGCTGGAAAAAGTCATTTTGGTAGCGGATGGGTATGGTTGG
TTTTTGATGTAAATGAGCAGAAATTGAAGATTGTATGTACTAGTAATGGAGATACTCCTATTACACAATATCCAAAAACA
CATCCTTTATTAACTATGGATGTATGGGAGCATGCTTATTACTTAGATTATTTTAATGTACGTCAGAATTACGTAGAAAC
TTTTTTACAACATTTAGTGAATTGGGATTTTGCAGCTCAGAAATTTTTAGCAATTTAA

Upstream 100 bases:

>100_bases
ACTCGAATAAATATTATGTAATAATTCATGTACATCTTAACTTTGCGTAGATTTTATGTAAAGTTGGACTTTTTAGTTGT
GTTTATTTAATAGAGGACAT

Downstream 100 bases:

>100_bases
TTTATTTTTTATTGTTAAAGGTAATCGATTTGAAGACACATATGAAATTTTAACTATGTTAAGTTATTACTTTTCTAAAT
TTTGAGATATTCTTAGTATT

Product: superoxide dismutase, Fe

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 205

Protein sequence:

>205_residues
MFTLPELPYQQDDLVPYLSLEILGYHYNKHHQGYVNTLNTLVTGTDFSKCTNEDLPKVIEVTSGDLGSRAIFNNAGQVWN
HNFYWESMKKNGGGSPTGKLLDKINEDFGSMDGFNNAFINAGKSHFGSGWVWLVFDVNEQKLKIVCTSNGDTPITQYPKT
HPLLTMDVWEHAYYLDYFNVRQNYVETFLQHLVNWDFAAQKFLAI

Sequences:

>Translated_205_residues
MFTLPELPYQQDDLVPYLSLEILGYHYNKHHQGYVNTLNTLVTGTDFSKCTNEDLPKVIEVTSGDLGSRAIFNNAGQVWN
HNFYWESMKKNGGGSPTGKLLDKINEDFGSMDGFNNAFINAGKSHFGSGWVWLVFDVNEQKLKIVCTSNGDTPITQYPKT
HPLLTMDVWEHAYYLDYFNVRQNYVETFLQHLVNWDFAAQKFLAI
>Mature_205_residues
MFTLPELPYQQDDLVPYLSLEILGYHYNKHHQGYVNTLNTLVTGTDFSKCTNEDLPKVIEVTSGDLGSRAIFNNAGQVWN
HNFYWESMKKNGGGSPTGKLLDKINEDFGSMDGFNNAFINAGKSHFGSGWVWLVFDVNEQKLKIVCTSNGDTPITQYPKT
HPLLTMDVWEHAYYLDYFNVRQNYVETFLQHLVNWDFAAQKFLAI

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=202, Percent_Identity=38.1188118811881, Blast_Score=135, Evalue=2e-32,
Organism=Homo sapiens, GI67782305, Length=202, Percent_Identity=38.1188118811881, Blast_Score=135, Evalue=2e-32,
Organism=Homo sapiens, GI67782309, Length=203, Percent_Identity=32.0197044334975, Blast_Score=100, Evalue=1e-21,
Organism=Escherichia coli, GI1787946, Length=203, Percent_Identity=48.7684729064039, Blast_Score=192, Evalue=1e-50,
Organism=Escherichia coli, GI1790342, Length=208, Percent_Identity=39.4230769230769, Blast_Score=142, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17506561, Length=200, Percent_Identity=36, Blast_Score=121, Evalue=2e-28,
Organism=Caenorhabditis elegans, GI17569479, Length=200, Percent_Identity=36.5, Blast_Score=120, Evalue=4e-28,
Organism=Saccharomyces cerevisiae, GI6321796, Length=211, Percent_Identity=35.0710900473934, Blast_Score=101, Evalue=7e-23,
Organism=Drosophila melanogaster, GI17136812, Length=200, Percent_Identity=35.5, Blast_Score=115, Evalue=3e-26,

Paralogues:

None

Copy number: 2020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). 900 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23489; Mature: 23489

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFTLPELPYQQDDLVPYLSLEILGYHYNKHHQGYVNTLNTLVTGTDFSKCTNEDLPKVIE
CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCEEE
VTSGDLGSRAIFNNAGQVWNHNFYWESMKKNGGGSPTGKLLDKINEDFGSMDGFNNAFIN
ECCCCCCCHHHHCCCCCCCCCCEEEEHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHC
AGKSHFGSGWVWLVFDVNEQKLKIVCTSNGDTPITQYPKTHPLLTMDVWEHAYYLDYFNV
CCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHH
RQNYVETFLQHLVNWDFAAQKFLAI
HHHHHHHHHHHHHCCCHHHHHHHCC
>Mature Secondary Structure
MFTLPELPYQQDDLVPYLSLEILGYHYNKHHQGYVNTLNTLVTGTDFSKCTNEDLPKVIE
CCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHHHHCCCCHHHHCCCCCCCEEE
VTSGDLGSRAIFNNAGQVWNHNFYWESMKKNGGGSPTGKLLDKINEDFGSMDGFNNAFIN
ECCCCCCCHHHHCCCCCCCCCCEEEEHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCHHHC
AGKSHFGSGWVWLVFDVNEQKLKIVCTSNGDTPITQYPKTHPLLTMDVWEHAYYLDYFNV
CCCCCCCCCEEEEEEECCCCEEEEEEECCCCCCCCCCCCCCCEEEHHHHHHHHHHHHHHH
RQNYVETFLQHLVNWDFAAQKFLAI
HHHHHHHHHHHHHCCCHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905231; 9298645 [H]