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The map label for this gene is yfgC [H]

Identifier: 88658252

GI number: 88658252

Start: 336854

End: 338161

Strand: Direct

Name: yfgC [H]

Synonym: ECH_0347

Alternate gene names: 88658252

Gene position: 336854-338161 (Clockwise)

Preceding gene: 88658496

Following gene: 88658318

Centisome position: 28.64

GC content: 29.97

Gene sequence:

>1308_bases
ATGAATATTAAAAGCGTGATATTATTTCTAAGTATTTTGCTTTATAGCAATGTATCATTTTGTCAAGATGGTTACATGAT
ATTTAGAGATAGTGAAGTCGAGGCTGTAATAAAGAAAATAGCATTTCCAATATTTATTGCAGCTAAAATTAATCCTGAGA
CTGTTAGAGTGTTTATTGTTAATGATAAAATGGTAAATGCTTATGTTGATGGTAATAATAATGATGTGTTTTTGAATTAT
GGGTTATTTGAGTTTTCAAATGATCCTAGTGTACTTATTGGGGTTTTAGCCCATGAAGTTGGTCATATATCTCAAAAACA
TGTGTTATTCCGTAGAAGTAAAGTACAAAATTCTATGATTTTGTCTGGGATAGGATATGTTCTAGGTATTATTACTGCAA
TTACAGTAAATCCTGATATGGGACAGGCAATAGCACTTGCTACTAATGATATTAGTAAAAAAATGTTTTTTCTTTATAGT
CGTTTACAGGAGGCGTCTGCAGATCAATGTGCATTAAGATATTTAGATGAAGCTGGGTATAGCAACGATGGATTAATTAA
AATGTTTAAGCATTTTTATTCACTGGAAGCACAATATCGAGGAAATATTGATCAATACTTATTATCGCATCCTCTTAGTT
ATGATAGGCTGTTGCAAATACAAAATTATCGCAATCGTAATGAGGTTCATGGTTTTTCTGATGAAGATGTACAGAAATTT
AAGCGAGTAGTAGAAAAAATTAATGCGTTTTTTAACCCAGTAGAACGTTTGGTTAATGATAAAAATGATATAAATCAATT
ATCTCCATACATACAATCTATTATTTTTTATAAGCAATCTGATGTTTCAAAAGCCTTAGAAAAACTTGATAATCTAATAC
TACAATCCCCTGAAGATCCTTATCTTTATGAGCTGAAAGCACAAATTTTGTATAAGGCAGGTGACATTAAAAAGTCTGTA
GAAAATTATAAATTAGCGCTTAAGTTTTCTTTCGATGATGTTTTAATAAAACTTGAAACATCACAAGCTTTGTTATTGTA
TGATCAGAAGGAAGCAGTAAATTATTTGGAACAAGTGACATACCAAGAACCAGATAATGTTTTTGCTTGGAAGCAATTGG
CTGTAGCTTATGGTAAAATAGGGGATTTGGGAATGTCGTATTTTTCACTGGCAAATAAATCTTTTTTTGAAAATAATAGA
AGAGATTTTGATAAATACTTTAGCTTAGCAAGAAAGTATTTACCAAAAGATAGCGTACACTTAGAACGTATGCGTGATCT
AAGGATAAATTTATTAAGTAATACATAA

Upstream 100 bases:

>100_bases
TATTAACAGTTGCTAATGATGTAGTGGATTGTTAATTTTCTTAGAAGGTGATCTACAATATGTATAATATATTTCAGTAA
ATATGGAAGTTGGTTAACTT

Downstream 100 bases:

>100_bases
GTTATTTAAATTACTAATAATATTATTTATATTTTAATAAATATGTAGTAGTTTATTACCTTATGCTAAGGTGTGGTAAT
TTTAATGAAGATACAAAATG

Product: M48 family peptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 435; Mature: 435

Protein sequence:

>435_residues
MNIKSVILFLSILLYSNVSFCQDGYMIFRDSEVEAVIKKIAFPIFIAAKINPETVRVFIVNDKMVNAYVDGNNNDVFLNY
GLFEFSNDPSVLIGVLAHEVGHISQKHVLFRRSKVQNSMILSGIGYVLGIITAITVNPDMGQAIALATNDISKKMFFLYS
RLQEASADQCALRYLDEAGYSNDGLIKMFKHFYSLEAQYRGNIDQYLLSHPLSYDRLLQIQNYRNRNEVHGFSDEDVQKF
KRVVEKINAFFNPVERLVNDKNDINQLSPYIQSIIFYKQSDVSKALEKLDNLILQSPEDPYLYELKAQILYKAGDIKKSV
ENYKLALKFSFDDVLIKLETSQALLLYDQKEAVNYLEQVTYQEPDNVFAWKQLAVAYGKIGDLGMSYFSLANKSFFENNR
RDFDKYFSLARKYLPKDSVHLERMRDLRINLLSNT

Sequences:

>Translated_435_residues
MNIKSVILFLSILLYSNVSFCQDGYMIFRDSEVEAVIKKIAFPIFIAAKINPETVRVFIVNDKMVNAYVDGNNNDVFLNY
GLFEFSNDPSVLIGVLAHEVGHISQKHVLFRRSKVQNSMILSGIGYVLGIITAITVNPDMGQAIALATNDISKKMFFLYS
RLQEASADQCALRYLDEAGYSNDGLIKMFKHFYSLEAQYRGNIDQYLLSHPLSYDRLLQIQNYRNRNEVHGFSDEDVQKF
KRVVEKINAFFNPVERLVNDKNDINQLSPYIQSIIFYKQSDVSKALEKLDNLILQSPEDPYLYELKAQILYKAGDIKKSV
ENYKLALKFSFDDVLIKLETSQALLLYDQKEAVNYLEQVTYQEPDNVFAWKQLAVAYGKIGDLGMSYFSLANKSFFENNR
RDFDKYFSLARKYLPKDSVHLERMRDLRINLLSNT
>Mature_435_residues
MNIKSVILFLSILLYSNVSFCQDGYMIFRDSEVEAVIKKIAFPIFIAAKINPETVRVFIVNDKMVNAYVDGNNNDVFLNY
GLFEFSNDPSVLIGVLAHEVGHISQKHVLFRRSKVQNSMILSGIGYVLGIITAITVNPDMGQAIALATNDISKKMFFLYS
RLQEASADQCALRYLDEAGYSNDGLIKMFKHFYSLEAQYRGNIDQYLLSHPLSYDRLLQIQNYRNRNEVHGFSDEDVQKF
KRVVEKINAFFNPVERLVNDKNDINQLSPYIQSIIFYKQSDVSKALEKLDNLILQSPEDPYLYELKAQILYKAGDIKKSV
ENYKLALKFSFDDVLIKLETSQALLLYDQKEAVNYLEQVTYQEPDNVFAWKQLAVAYGKIGDLGMSYFSLANKSFFENNR
RDFDKYFSLARKYLPKDSVHLERMRDLRINLLSNT

Specific function: Unknown

COG id: COG4783

COG function: function code R; Putative Zn-dependent protease, contains TPR repeats

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 4 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788840, Length=332, Percent_Identity=24.0963855421687, Blast_Score=83, Evalue=3e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001915
- InterPro:   IPR011990 [H]

Pfam domain/function: PF01435 Peptidase_M48 [H]

EC number: NA

Molecular weight: Translated: 50207; Mature: 50207

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS50293 TPR_REGION ; PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIKSVILFLSILLYSNVSFCQDGYMIFRDSEVEAVIKKIAFPIFIAAKINPETVRVFIV
CCHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHCCEEEEEEECCCEEEEEEE
NDKMVNAYVDGNNNDVFLNYGLFEFSNDPSVLIGVLAHEVGHISQKHVLFRRSKVQNSMI
ECEEEEEEEECCCCEEEEEECEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LSGIGYVLGIITAITVNPDMGQAIALATNDISKKMFFLYSRLQEASADQCALRYLDEAGY
HHHHHHHHHHHHHEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
SNDGLIKMFKHFYSLEAQYRGNIDQYLLSHPLSYDRLLQIQNYRNRNEVHGFSDEDVQKF
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHH
KRVVEKINAFFNPVERLVNDKNDINQLSPYIQSIIFYKQSDVSKALEKLDNLILQSPEDP
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
YLYELKAQILYKAGDIKKSVENYKLALKFSFDDVLIKLETSQALLLYDQKEAVNYLEQVT
HHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECEEEEEEECCCEEEEEECHHHHHHHHHHC
YQEPDNVFAWKQLAVAYGKIGDLGMSYFSLANKSFFENNRRDFDKYFSLARKYLPKDSVH
CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHH
LERMRDLRINLLSNT
HHHHHHHHHHHCCCC
>Mature Secondary Structure
MNIKSVILFLSILLYSNVSFCQDGYMIFRDSEVEAVIKKIAFPIFIAAKINPETVRVFIV
CCHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHCCEEEEEEECCCEEEEEEE
NDKMVNAYVDGNNNDVFLNYGLFEFSNDPSVLIGVLAHEVGHISQKHVLFRRSKVQNSMI
ECEEEEEEEECCCCEEEEEECEEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
LSGIGYVLGIITAITVNPDMGQAIALATNDISKKMFFLYSRLQEASADQCALRYLDEAGY
HHHHHHHHHHHHHEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCC
SNDGLIKMFKHFYSLEAQYRGNIDQYLLSHPLSYDRLLQIQNYRNRNEVHGFSDEDVQKF
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCHHHHHHH
KRVVEKINAFFNPVERLVNDKNDINQLSPYIQSIIFYKQSDVSKALEKLDNLILQSPEDP
HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
YLYELKAQILYKAGDIKKSVENYKLALKFSFDDVLIKLETSQALLLYDQKEAVNYLEQVT
HHHHHHHHHHHHHHHHHHHHCCEEEEEEEEECEEEEEEECCCEEEEEECHHHHHHHHHHC
YQEPDNVFAWKQLAVAYGKIGDLGMSYFSLANKSFFENNRRDFDKYFSLARKYLPKDSVH
CCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHH
LERMRDLRINLLSNT
HHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]