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The map label for this gene is cspG [C]

Identifier: 88658217

GI number: 88658217

Start: 283625

End: 283891

Strand: Direct

Name: cspG [C]

Synonym: ECH_0298

Alternate gene names: 88658217

Gene position: 283625-283891 (Clockwise)

Preceding gene: 88658524

Following gene: 88658105

Centisome position: 24.11

GC content: 31.46

Gene sequence:

>267_bases
ATGTCTCAACGGTTAGTGGATGATTCAACTTACACTGGATATGTGAAGTGGTTTAGTTCAGAAAAGGGTTATGGTTTTAT
TTGTAAAGATCAAGGTAATAATAAGATAAGGAATATTGGTCAAGATATTAAGGATATTTTTGTTCATATTACTGCATTGC
AAAGAAGCAAAATTGATGGTTTAAGAGAAGGCCAAAAGGTAAAGTATCAGCTTGATAAAAATAATGGTAAGTTTTCAGCA
GTTAATCTTGAGTTGTTAGAAGGTTAG

Upstream 100 bases:

>100_bases
ATCTAACATGGTATTGTATGTTTTAGTACATGTTATTATTAACTAGTATGTTCTTAGCAGTATAGTCTATGCGTTTATTT
TAATTTTTAAGGATTTTTGA

Downstream 100 bases:

>100_bases
AATCATGTAATGCGCTATAAATATTTTTATTATATTAGAAAAGTTTATAGCGTTCTTTTTATAATATTTTAGATGTAGGT
TCTTTTAGATTATTATCGGT

Product: CSD family cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 88; Mature: 87

Protein sequence:

>88_residues
MSQRLVDDSTYTGYVKWFSSEKGYGFICKDQGNNKIRNIGQDIKDIFVHITALQRSKIDGLREGQKVKYQLDKNNGKFSA
VNLELLEG

Sequences:

>Translated_88_residues
MSQRLVDDSTYTGYVKWFSSEKGYGFICKDQGNNKIRNIGQDIKDIFVHITALQRSKIDGLREGQKVKYQLDKNNGKFSA
VNLELLEG
>Mature_87_residues
SQRLVDDSTYTGYVKWFSSEKGYGFICKDQGNNKIRNIGQDIKDIFVHITALQRSKIDGLREGQKVKYQLDKNNGKFSAV
NLELLEG

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI2367114, Length=75, Percent_Identity=38.6666666666667, Blast_Score=59, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 10061; Mature: 9929

Theoretical pI: Translated: 9.47; Mature: 9.47

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQRLVDDSTYTGYVKWFSSEKGYGFICKDQGNNKIRNIGQDIKDIFVHITALQRSKIDG
CCCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
LREGQKVKYQLDKNNGKFSAVNLELLEG
CCCCCEEEEEEECCCCEEEEEEEEEECC
>Mature Secondary Structure 
SQRLVDDSTYTGYVKWFSSEKGYGFICKDQGNNKIRNIGQDIKDIFVHITALQRSKIDG
CCCCCCCCCCEEEEEEECCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCCC
LREGQKVKYQLDKNNGKFSAVNLELLEG
CCCCCEEEEEEECCCCEEEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]