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The map label for this gene is secF [H]

Identifier: 88658165

GI number: 88658165

Start: 84942

End: 85823

Strand: Direct

Name: secF [H]

Synonym: ECH_0095

Alternate gene names: 88658165

Gene position: 84942-85823 (Clockwise)

Preceding gene: 88658466

Following gene: 88657701

Centisome position: 7.22

GC content: 30.73

Gene sequence:

>882_bases
GTGGTTTTTCTTAGTGATATAAATATAGACTTTTCTAAATATAGGATATGTGCTCTATCTTGTAGTGGCGTCCTCATGCT
TATTTCAATATTACTTGTTTTATTAAAAGGCATATGCTTTGGTACAGATTTTGCAGGTGGTATAATAATTGAACTTCGTG
CAGATCAAGTAGATGTTAAGAGTGTTAATTTAAAACTGCAGGAAAATGGTTTTGTAGGTTTTTCTGTTCAAGGTTTTAAA
AATAATGATAGAGAACTGATGGTTCGTTTTAAAAATGAAAAAGATTCAGATCAATCGGATACTGTTGAGAAAATAAAAGG
AGTGTTAAATAAAATATTGGGTGAAGTAACTTATTTAAAAATAGATTATGTTGGACCACAAGTAGGGTATAAACAGATTT
TTGAAGGATTGTGTGCAATAATATTTTCATTATTAGGAATGTTTTTGTATTTGTGGGTAAGATTTCAGTGGAGATTTGCA
TTAGGTGGTGTTTTGGCTCTGATACATGATGTTGTATTAACATTGGGGTTGGTTAGTTTATGTAATATTGAATTTAATCT
TTCTTCAACTGCAGCAATCTTAACAGTTATCGGTTATTCAGTAAATGATTCTGTGGTAATATATGACAGGATTAGGGAAT
TGCTTAAAAAGAAACTGCAAAAAAAACTGTCTGATGTCATTAATATCAGTATTAACGCTACTTTATCAAGGACAATATTG
ACATCTGGTACCACTATGCTAGCGTCTGTCCCTTTAATGTTGTTATGTCAGGGTACAGTTAGAGAATTAAGCATAATTGT
ATTCTTTGGTATAGCTGTTGGGACATATTCTTCAATATTTATAGCAACAACTTCTTTATCTAATGATATTAACAAAACCT
AG

Upstream 100 bases:

>100_bases
ATATATCTTAATGTTTGTTACATTATGAAAAGGTGTTTTTTCTTGAATAAGTGCTAGAAATAACATAGGCTTAGTAAGTG
AATTTGATAGTTTTTTAGTC

Downstream 100 bases:

>100_bases
ATTTTAGTAGTACAGAACAACTTTTTTCCTAAGTAAAAAAGCTTTTTAATGTTTAGCAAAATTGTTAGGTGTAGTATCTT
GTTTTGTGACTATAGAAAAA

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MVFLSDINIDFSKYRICALSCSGVLMLISILLVLLKGICFGTDFAGGIIIELRADQVDVKSVNLKLQENGFVGFSVQGFK
NNDRELMVRFKNEKDSDQSDTVEKIKGVLNKILGEVTYLKIDYVGPQVGYKQIFEGLCAIIFSLLGMFLYLWVRFQWRFA
LGGVLALIHDVVLTLGLVSLCNIEFNLSSTAAILTVIGYSVNDSVVIYDRIRELLKKKLQKKLSDVINISINATLSRTIL
TSGTTMLASVPLMLLCQGTVRELSIIVFFGIAVGTYSSIFIATTSLSNDINKT

Sequences:

>Translated_293_residues
MVFLSDINIDFSKYRICALSCSGVLMLISILLVLLKGICFGTDFAGGIIIELRADQVDVKSVNLKLQENGFVGFSVQGFK
NNDRELMVRFKNEKDSDQSDTVEKIKGVLNKILGEVTYLKIDYVGPQVGYKQIFEGLCAIIFSLLGMFLYLWVRFQWRFA
LGGVLALIHDVVLTLGLVSLCNIEFNLSSTAAILTVIGYSVNDSVVIYDRIRELLKKKLQKKLSDVINISINATLSRTIL
TSGTTMLASVPLMLLCQGTVRELSIIVFFGIAVGTYSSIFIATTSLSNDINKT
>Mature_293_residues
MVFLSDINIDFSKYRICALSCSGVLMLISILLVLLKGICFGTDFAGGIIIELRADQVDVKSVNLKLQENGFVGFSVQGFK
NNDRELMVRFKNEKDSDQSDTVEKIKGVLNKILGEVTYLKIDYVGPQVGYKQIFEGLCAIIFSLLGMFLYLWVRFQWRFA
LGGVLALIHDVVLTLGLVSLCNIEFNLSSTAAILTVIGYSVNDSVVIYDRIRELLKKKLQKKLSDVINISINATLSRTIL
TSGTTMLASVPLMLLCQGTVRELSIIVFFGIAVGTYSSIFIATTSLSNDINKT

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=278, Percent_Identity=34.1726618705036, Blast_Score=171, Evalue=4e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 32399; Mature: 32399

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFLSDINIDFSKYRICALSCSGVLMLISILLVLLKGICFGTDFAGGIIIELRADQVDVK
CEEEEECCCCHHHEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEE
SVNLKLQENGFVGFSVQGFKNNDRELMVRFKNEKDSDQSDTVEKIKGVLNKILGEVTYLK
EEEEEEECCCEEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEE
IDYVGPQVGYKQIFEGLCAIIFSLLGMFLYLWVRFQWRFALGGVLALIHDVVLTLGLVSL
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CNIEFNLSSTAAILTVIGYSVNDSVVIYDRIRELLKKKLQKKLSDVINISINATLSRTIL
HCEEECCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHEEEEEECEEEEHHH
TSGTTMLASVPLMLLCQGTVRELSIIVFFGIAVGTYSSIFIATTSLSNDINKT
HCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC
>Mature Secondary Structure
MVFLSDINIDFSKYRICALSCSGVLMLISILLVLLKGICFGTDFAGGIIIELRADQVDVK
CEEEEECCCCHHHEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCEEEEE
SVNLKLQENGFVGFSVQGFKNNDRELMVRFKNEKDSDQSDTVEKIKGVLNKILGEVTYLK
EEEEEEECCCEEEEEEECCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCEEEEE
IDYVGPQVGYKQIFEGLCAIIFSLLGMFLYLWVRFQWRFALGGVLALIHDVVLTLGLVSL
EEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CNIEFNLSSTAAILTVIGYSVNDSVVIYDRIRELLKKKLQKKLSDVINISINATLSRTIL
HCEEECCCCHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHHHEEEEEECEEEEHHH
TSGTTMLASVPLMLLCQGTVRELSIIVFFGIAVGTYSSIFIATTSLSNDINKT
HCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA