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The map label for this gene is omp-1V [H]

Identifier: 88657688

GI number: 88657688

Start: 1150017

End: 1150856

Strand: Direct

Name: omp-1V [H]

Synonym: ECH_1127

Alternate gene names: 88657688

Gene position: 1150017-1150856 (Clockwise)

Preceding gene: 88657752

Following gene: 88658368

Centisome position: 97.77

GC content: 31.43

Gene sequence:

>840_bases
ATGAGCAAAAAAAAGTTTATTACAATAGGAACAGTACTTGCATCTCTATTATCATTCTTATCTATTGAATCCTTTTCAGC
TATAAATCATAATCATACAGGAAATAACACTAGTGGTATATATATTACAGGGCAGTATAGACCAGGAGTATCCCATTTTA
GCAATTTCTCAGTAAAAGAAACTAATGTTGATACAATACAACTAGTAGGATATAAAAAAAGTGCGTCTTCTATCGATCCT
AACACTTATTCAAACTTTCAAGGTCCATATACTGTTACATTTCAAGATAATGCTGCTAGTTTCAGTGGAGCAATTGGATA
TTCTTACCCCGAAAGTCTAAGACTTGAACTTGAAGGTTCTTACGAAAAATTTGATGTCAAAGATCCTAAAGACTACTCAG
CAAAAGATGCTTTTAGGTTTTTTGCTCTAGCACGTAATACGTCTACTACTGTTCCTGATGCTCAAAAATATACAGTTATG
AAGAATAATGGCTTATCTGTTGCATCAATCATGATCAATGGTTGTTATGATCTATCTTTTAATAATTTAGTCGTATCACC
TTATATATGTGCAGGTATTGGTGAAGATTTCATTGAATTTTTTGATACTTTGCACATTAAACTTGCTTATCAAGGAAAAC
TAGGTATTAGTTATTACTTCTTTCCTAAGATTAATGTATTTGCTGGTGGGTACTATCATAGAGTTATAGGGAATAAATTT
AAAAATTTAAATGTTAACCATGTTGTTACACTTGATGAATTTCCTAAAGCAACTTCTGCAGTAGCTACACTTAATGTTGC
TTATTTTGGTGGTGAAGCTGGAGTAAAGTTTACATTTTAA

Upstream 100 bases:

>100_bases
ACCTACCATTACCTCTGCAACAGCCAAACTAAACATTGAATATTTTGGTGGTGAAGTTGGGATGAGATTTATATTTTAAA
TAATCAAATAAGGAATTTTT

Downstream 100 bases:

>100_bases
ATAATATGTGGGCAGTTCTCATATGATATATAAAGAAAAACTTACTAGAGTGGGAGAATATATCTTAGCATATTTATCAT
TTATTCTTTCTACTTATATC

Product: major outer membrane protein OMP-1V

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 279; Mature: 278

Protein sequence:

>279_residues
MSKKKFITIGTVLASLLSFLSIESFSAINHNHTGNNTSGIYITGQYRPGVSHFSNFSVKETNVDTIQLVGYKKSASSIDP
NTYSNFQGPYTVTFQDNAASFSGAIGYSYPESLRLELEGSYEKFDVKDPKDYSAKDAFRFFALARNTSTTVPDAQKYTVM
KNNGLSVASIMINGCYDLSFNNLVVSPYICAGIGEDFIEFFDTLHIKLAYQGKLGISYYFFPKINVFAGGYYHRVIGNKF
KNLNVNHVVTLDEFPKATSAVATLNVAYFGGEAGVKFTF

Sequences:

>Translated_279_residues
MSKKKFITIGTVLASLLSFLSIESFSAINHNHTGNNTSGIYITGQYRPGVSHFSNFSVKETNVDTIQLVGYKKSASSIDP
NTYSNFQGPYTVTFQDNAASFSGAIGYSYPESLRLELEGSYEKFDVKDPKDYSAKDAFRFFALARNTSTTVPDAQKYTVM
KNNGLSVASIMINGCYDLSFNNLVVSPYICAGIGEDFIEFFDTLHIKLAYQGKLGISYYFFPKINVFAGGYYHRVIGNKF
KNLNVNHVVTLDEFPKATSAVATLNVAYFGGEAGVKFTF
>Mature_278_residues
SKKKFITIGTVLASLLSFLSIESFSAINHNHTGNNTSGIYITGQYRPGVSHFSNFSVKETNVDTIQLVGYKKSASSIDPN
TYSNFQGPYTVTFQDNAASFSGAIGYSYPESLRLELEGSYEKFDVKDPKDYSAKDAFRFFALARNTSTTVPDAQKYTVMK
NNGLSVASIMINGCYDLSFNNLVVSPYICAGIGEDFIEFFDTLHIKLAYQGKLGISYYFFPKINVFAGGYYHRVIGNKFK
NLNVNHVVTLDEFPKATSAVATLNVAYFGGEAGVKFTF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 30843; Mature: 30712

Theoretical pI: Translated: 8.53; Mature: 8.53

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKKKFITIGTVLASLLSFLSIESFSAINHNHTGNNTSGIYITGQYRPGVSHFSNFSVKE
CCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHCCCEEEE
TNVDTIQLVGYKKSASSIDPNTYSNFQGPYTVTFQDNAASFSGAIGYSYPESLRLELEGS
CCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECC
YEKFDVKDPKDYSAKDAFRFFALARNTSTTVPDAQKYTVMKNNGLSVASIMINGCYDLSF
EEEECCCCCCCCCHHHHHEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCC
NNLVVSPYICAGIGEDFIEFFDTLHIKLAYQGKLGISYYFFPKINVFAGGYYHRVIGNKF
CCEEECCEEEECCCHHHHHHHHEEEEEEEEECCCCEEEEEECEEEEEECCEEEEHHCCCC
KNLNVNHVVTLDEFPKATSAVATLNVAYFGGEAGVKFTF
CCCCCEEEEEECCCCCCCHHEEEEEEEEECCCCCEEEEC
>Mature Secondary Structure 
SKKKFITIGTVLASLLSFLSIESFSAINHNHTGNNTSGIYITGQYRPGVSHFSNFSVKE
CCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCHHHHCCCEEEE
TNVDTIQLVGYKKSASSIDPNTYSNFQGPYTVTFQDNAASFSGAIGYSYPESLRLELEGS
CCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCEEEEEEECC
YEKFDVKDPKDYSAKDAFRFFALARNTSTTVPDAQKYTVMKNNGLSVASIMINGCYDLSF
EEEECCCCCCCCCHHHHHEEEEEECCCCCCCCCCCEEEEEECCCCEEEEEEEEEEEECCC
NNLVVSPYICAGIGEDFIEFFDTLHIKLAYQGKLGISYYFFPKINVFAGGYYHRVIGNKF
CCEEECCEEEECCCHHHHHHHHEEEEEEEEECCCCEEEEEECEEEEEECCEEEEHHCCCC
KNLNVNHVVTLDEFPKATSAVATLNVAYFGGEAGVKFTF
CCCCCEEEEEECCCCCCCHHEEEEEEEEECCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]