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The map label for this gene is omp-1U [H]

Identifier: 88657752

GI number: 88657752

Start: 1149108

End: 1149995

Strand: Direct

Name: omp-1U [H]

Synonym: ECH_1126

Alternate gene names: 88657752

Gene position: 1149108-1149995 (Clockwise)

Preceding gene: 88657599

Following gene: 88657688

Centisome position: 97.69

GC content: 29.17

Gene sequence:

>888_bases
ATGACAAAGAAATTTAATTTTGTAAATGTTATATTAACATTTTTGTTATTTCTTTTCCCACTTAAGTCATTTACAACATA
TGCAAATAATAACACAATCACTCAAAAAGTTGGATTGTACATAAGTGGTCAATATAAGCCAAGTATTCCTCATTTCAAGA
ATTTTTCAGTAGAAGAAAATGACAAAGTAGTAGATTTGATAGGTCTTACAACTGATGTTACATATATCACAGAACATATA
TTACGAGATAATACAAAATTCAACACTCATTATATTGCAAAGTTCAAGAACAATTTTATAAATTTCAGCAGTGCAATTGG
TTATTATTCTGGGCAAGGACCAAGGTTAGAAATAGAAAGCTCTTATGGGGATTTTGATGTTGTAAATTATAAAAATTATG
CAGTACAAGATGTTAATAGATATTTTGCTTTAGTACGTGAAAAAAATGGTTCAAATTTCTCTCCAAAACCACATGAAACT
AGTCAACCCTCTGACAGTAATCCTAAAAAGTCTTTTTATACTTTAATGAAGAATAATGGGGTATTTGTTGCATCAGTAAT
AATCAACGGTTGTTATGATTTTTCTTTTAATAACACAACAATATCACCTTACGTATGTATAGGAGTTGGAGGAGATTTTA
TAGAGTTTTTTGAAGTAATGCATATCAAGTTTGCTTGCCAAAGTAAGGTTGGTATTAGCTATCCAATATCTCCCTCTATT
ACTATTTTTGCTGATGCACATTATCACAAGGTCATAAATAATAAATTTAACAACCTACATGTTAAGTATTCATATGAACT
TAAAAACTCACCTACCATTACCTCTGCAACAGCCAAACTAAACATTGAATATTTTGGTGGTGAAGTTGGGATGAGATTTA
TATTTTAA

Upstream 100 bases:

>100_bases
TTCTGAAGAAACTATACCTATATTAGCAAAACTTGATATTGGTTATTTTGGAAGTGAAATTGGAATAAGGTTTATGTTTA
ACTAAGTAAGGTTATATACT

Downstream 100 bases:

>100_bases
ATAATCAAATAAGGAATTTTTATGAGCAAAAAAAAGTTTATTACAATAGGAACAGTACTTGCATCTCTATTATCATTCTT
ATCTATTGAATCCTTTTCAG

Product: major outer membrane protein OMP-1U

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 295; Mature: 294

Protein sequence:

>295_residues
MTKKFNFVNVILTFLLFLFPLKSFTTYANNNTITQKVGLYISGQYKPSIPHFKNFSVEENDKVVDLIGLTTDVTYITEHI
LRDNTKFNTHYIAKFKNNFINFSSAIGYYSGQGPRLEIESSYGDFDVVNYKNYAVQDVNRYFALVREKNGSNFSPKPHET
SQPSDSNPKKSFYTLMKNNGVFVASVIINGCYDFSFNNTTISPYVCIGVGGDFIEFFEVMHIKFACQSKVGISYPISPSI
TIFADAHYHKVINNKFNNLHVKYSYELKNSPTITSATAKLNIEYFGGEVGMRFIF

Sequences:

>Translated_295_residues
MTKKFNFVNVILTFLLFLFPLKSFTTYANNNTITQKVGLYISGQYKPSIPHFKNFSVEENDKVVDLIGLTTDVTYITEHI
LRDNTKFNTHYIAKFKNNFINFSSAIGYYSGQGPRLEIESSYGDFDVVNYKNYAVQDVNRYFALVREKNGSNFSPKPHET
SQPSDSNPKKSFYTLMKNNGVFVASVIINGCYDFSFNNTTISPYVCIGVGGDFIEFFEVMHIKFACQSKVGISYPISPSI
TIFADAHYHKVINNKFNNLHVKYSYELKNSPTITSATAKLNIEYFGGEVGMRFIF
>Mature_294_residues
TKKFNFVNVILTFLLFLFPLKSFTTYANNNTITQKVGLYISGQYKPSIPHFKNFSVEENDKVVDLIGLTTDVTYITEHIL
RDNTKFNTHYIAKFKNNFINFSSAIGYYSGQGPRLEIESSYGDFDVVNYKNYAVQDVNRYFALVREKNGSNFSPKPHETS
QPSDSNPKKSFYTLMKNNGVFVASVIINGCYDFSFNNTTISPYVCIGVGGDFIEFFEVMHIKFACQSKVGISYPISPSIT
IFADAHYHKVINNKFNNLHVKYSYELKNSPTITSATAKLNIEYFGGEVGMRFIF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 33616; Mature: 33485

Theoretical pI: Translated: 9.05; Mature: 9.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKKFNFVNVILTFLLFLFPLKSFTTYANNNTITQKVGLYISGQYKPSIPHFKNFSVEEN
CCCCCHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCC
DKVVDLIGLTTDVTYITEHILRDNTKFNTHYIAKFKNNFINFSSAIGYYSGQGPRLEIES
CCEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCEEEHHHHCCEECCCCCEEEEEC
SYGDFDVVNYKNYAVQDVNRYFALVREKNGSNFSPKPHETSQPSDSNPKKSFYTLMKNNG
CCCCEEEEECCCHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCC
VFVASVIINGCYDFSFNNTTISPYVCIGVGGDFIEFFEVMHIKFACQSKVGISYPISPSI
EEEEEEEEEEEEEECCCCCEECCEEEEECCCHHHHHHHHHHHHEEECCCCCEECCCCCCE
TIFADAHYHKVINNKFNNLHVKYSYELKNSPTITSATAKLNIEYFGGEVGMRFIF
EEEECCHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEEEEEEEEECCCEEEEEEC
>Mature Secondary Structure 
TKKFNFVNVILTFLLFLFPLKSFTTYANNNTITQKVGLYISGQYKPSIPHFKNFSVEEN
CCCCHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCCC
DKVVDLIGLTTDVTYITEHILRDNTKFNTHYIAKFKNNFINFSSAIGYYSGQGPRLEIES
CCEEEEEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCEEEHHHHCCEECCCCCEEEEEC
SYGDFDVVNYKNYAVQDVNRYFALVREKNGSNFSPKPHETSQPSDSNPKKSFYTLMKNNG
CCCCEEEEECCCHHHHHHHHEEEEEECCCCCCCCCCCCCCCCCCCCCCCHHEEEEEECCC
VFVASVIINGCYDFSFNNTTISPYVCIGVGGDFIEFFEVMHIKFACQSKVGISYPISPSI
EEEEEEEEEEEEEECCCCCEECCEEEEECCCHHHHHHHHHHHHEEECCCCCEECCCCCCE
TIFADAHYHKVINNKFNNLHVKYSYELKNSPTITSATAKLNIEYFGGEVGMRFIF
EEEECCHHHHHHCCCCCEEEEEEEEEECCCCCEEEEEEEEEEEEECCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]