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The map label for this gene is omp-1T [H]

Identifier: 88657599

GI number: 88657599

Start: 1148274

End: 1149092

Strand: Direct

Name: omp-1T [H]

Synonym: ECH_1125

Alternate gene names: 88657599

Gene position: 1148274-1149092 (Clockwise)

Preceding gene: 88658173

Following gene: 88657752

Centisome position: 97.62

GC content: 27.59

Gene sequence:

>819_bases
ATGTATATGTATAACAAAAAACACTATTGCTATATAGTAACATATGTTATAACACTATTCTTTCTATTGTTACCTATAGA
ATCTTTGTCAGCATTAATAGGCAATGTAGAAAAGGATTTAAAAGTTTCTAGTACATATGTCAGTAGTCAATATAAACCCA
GTATTTTTCACTTTAGAAATTTCTCAATACAAGAATCTCACCCTAAAAAAAGTTCAGAAGAATTCAAAAAAATAAAGGCT
AATCTAAATAATATACTCAAATCAAACGCTTATAACCTACAGTTTCAAGATAATACCACTAGTTTTAGTGGAACCATTGG
CTACTTTTCTAAGGGACTAAGACTTGAAGCAGAGGGTTGTTATCAAGAGTTCAACGTAAAAAATTCCAATAACTCACTAA
TAATAAGTTCAAATAAATACCATTCTAGAATACATGATGAAAATTATGCTATTACAACAAATAATAAATTATCCATCGCA
TCTATTATGGTTAACACCTGCTATGATATTTCAATTAATAATACATCAATAGTACCGTATTTATGCACAGGCATTGGTGA
AGATCTTGTAGGGCTTTTTAATACAATACATTTTAAACTTGCATATCAAGGGAAAGTTGGAATGAGTTATTTGATAAATA
ACAATATCCTATTATTTTCTGACATATATTATCATAAAGTCATGGGTAACAGATTTAAAAATTTGTACATGCAATATGTA
GCTGATCCTAATATTTCTGAAGAAACTATACCTATATTAGCAAAACTTGATATTGGTTATTTTGGAAGTGAAATTGGAAT
AAGGTTTATGTTTAACTAA

Upstream 100 bases:

>100_bases
CAAAGATATAGATCAAGATGTCACTGCATCATTAACCCTTAATCTAGAACATTTTAGCAGTGAAATTGGATTAAGTTTTA
TATTTTAAAGTGAAGGAAAT

Downstream 100 bases:

>100_bases
GTAAGGTTATATACTATGACAAAGAAATTTAATTTTGTAAATGTTATATTAACATTTTTGTTATTTCTTTTCCCACTTAA
GTCATTTACAACATATGCAA

Product: major outer membrane protein OMP-1T

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 272

Protein sequence:

>272_residues
MYMYNKKHYCYIVTYVITLFFLLLPIESLSALIGNVEKDLKVSSTYVSSQYKPSIFHFRNFSIQESHPKKSSEEFKKIKA
NLNNILKSNAYNLQFQDNTTSFSGTIGYFSKGLRLEAEGCYQEFNVKNSNNSLIISSNKYHSRIHDENYAITTNNKLSIA
SIMVNTCYDISINNTSIVPYLCTGIGEDLVGLFNTIHFKLAYQGKVGMSYLINNNILLFSDIYYHKVMGNRFKNLYMQYV
ADPNISEETIPILAKLDIGYFGSEIGIRFMFN

Sequences:

>Translated_272_residues
MYMYNKKHYCYIVTYVITLFFLLLPIESLSALIGNVEKDLKVSSTYVSSQYKPSIFHFRNFSIQESHPKKSSEEFKKIKA
NLNNILKSNAYNLQFQDNTTSFSGTIGYFSKGLRLEAEGCYQEFNVKNSNNSLIISSNKYHSRIHDENYAITTNNKLSIA
SIMVNTCYDISINNTSIVPYLCTGIGEDLVGLFNTIHFKLAYQGKVGMSYLINNNILLFSDIYYHKVMGNRFKNLYMQYV
ADPNISEETIPILAKLDIGYFGSEIGIRFMFN
>Mature_272_residues
MYMYNKKHYCYIVTYVITLFFLLLPIESLSALIGNVEKDLKVSSTYVSSQYKPSIFHFRNFSIQESHPKKSSEEFKKIKA
NLNNILKSNAYNLQFQDNTTSFSGTIGYFSKGLRLEAEGCYQEFNVKNSNNSLIISSNKYHSRIHDENYAITTNNKLSIA
SIMVNTCYDISINNTSIVPYLCTGIGEDLVGLFNTIHFKLAYQGKVGMSYLINNNILLFSDIYYHKVMGNRFKNLYMQYV
ADPNISEETIPILAKLDIGYFGSEIGIRFMFN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 31234; Mature: 31234

Theoretical pI: Translated: 8.71; Mature: 8.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYMYNKKHYCYIVTYVITLFFLLLPIESLSALIGNVEKDLKVSSTYVSSQYKPSIFHFRN
CCEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHCCEEHHHEECCCCCCCEEEEEC
FSIQESHPKKSSEEFKKIKANLNNILKSNAYNLQFQDNTTSFSGTIGYFSKGLRLEAEGC
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHCCCCEEEECCC
YQEFNVKNSNNSLIISSNKYHSRIHDENYAITTNNKLSIASIMVNTCYDISINNTSIVPY
HHHCCCCCCCCEEEEECCCHHHHCCCCCEEEEECCCEEEEEEEEEEEEEEEECCCEEHHH
LCTGIGEDLVGLFNTIHFKLAYQGKVGMSYLINNNILLFSDIYYHKVMGNRFKNLYMQYV
HHHCCCHHHHHHHHHEEEEEEECCCCCEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHH
ADPNISEETIPILAKLDIGYFGSEIGIRFMFN
CCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC
>Mature Secondary Structure
MYMYNKKHYCYIVTYVITLFFLLLPIESLSALIGNVEKDLKVSSTYVSSQYKPSIFHFRN
CCEECCCCEEEHHHHHHHHHHHHHHHHHHHHHHCCCHHCCEEHHHEECCCCCCCEEEEEC
FSIQESHPKKSSEEFKKIKANLNNILKSNAYNLQFQDNTTSFSGTIGYFSKGLRLEAEGC
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHCCCCEEEECCC
YQEFNVKNSNNSLIISSNKYHSRIHDENYAITTNNKLSIASIMVNTCYDISINNTSIVPY
HHHCCCCCCCCEEEEECCCHHHHCCCCCEEEEECCCEEEEEEEEEEEEEEEECCCEEHHH
LCTGIGEDLVGLFNTIHFKLAYQGKVGMSYLINNNILLFSDIYYHKVMGNRFKNLYMQYV
HHHCCCHHHHHHHHHEEEEEEECCCCCEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHH
ADPNISEETIPILAKLDIGYFGSEIGIRFMFN
CCCCCCCCCEEEEEEEECCCCCCCCCEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]