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The map label for this gene is yrdA [H]

Identifier: 88608798

GI number: 88608798

Start: 35405

End: 35962

Strand: Reverse

Name: yrdA [H]

Synonym: NSE_0045

Alternate gene names: 88608798

Gene position: 35962-35405 (Counterclockwise)

Preceding gene: 88608506

Following gene: 88608780

Centisome position: 4.19

GC content: 40.14

Gene sequence:

>558_bases
GTGGGATATCTCTCGTTTACCATGACCCTGTTGAAATTGAAAGGGACCTTTCCAAGTACCGCCGACACCTATTTCATAGC
TGAGAATGCATTTCTTATTGGAAACGTTACAGTTGGTACTAGAAGCAGTATTTGGTATGGGTGCAATATTCGAGGCGATG
TTAATTACATAAACATTGGCAGTTATACAAATATTCAAGATTGCACAATGATACATGTTAGCCACGGTGAAAAAGGCCAC
ACAGAAATTGGTAACTATGTCACTGTTGGACATCAATGCTTATTACATGCGTGCACTTTAATGGACGAAACTTTCGTAGG
TATGGGCTCGATAATAATGGATGGCGCTATTATGGAAAGTGGATCAATGGTTGCAGCTGGCTCTTTAGTGACGTCTAACA
AACGGATAAAATCCGGTGAACTATGGCTGGGGAGACCAGCAAAATTTGTGAGAATACTTACTGCAGAGGAAATCTCACAT
ATAAGAGAGTCCGCAATAAGGTACGCTGCACTTGCAGAGGAATATATAAGAGATTTATCGAACAAGACAACTTTTTAA

Upstream 100 bases:

>100_bases
ATTCGTCAAGGAAGTAATACGAAATAACAACCTGACGCAAAAATCACATCTACAACACCTGGAATACCTACCATAAGCGT
CTTCCAACAATTATAATCCC

Downstream 100 bases:

>100_bases
GCATTTCTTACGCAGTTTTTGGAAAAATGTCAGACAAAGAGAAAATAATCATCAATGTAAATGGTGACAATATTGCTGTG
GAACCGGGAACTACATTGTC

Product: hexapeptide transferase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 185; Mature: 184

Protein sequence:

>185_residues
MGYLSFTMTLLKLKGTFPSTADTYFIAENAFLIGNVTVGTRSSIWYGCNIRGDVNYINIGSYTNIQDCTMIHVSHGEKGH
TEIGNYVTVGHQCLLHACTLMDETFVGMGSIIMDGAIMESGSMVAAGSLVTSNKRIKSGELWLGRPAKFVRILTAEEISH
IRESAIRYAALAEEYIRDLSNKTTF

Sequences:

>Translated_185_residues
MGYLSFTMTLLKLKGTFPSTADTYFIAENAFLIGNVTVGTRSSIWYGCNIRGDVNYINIGSYTNIQDCTMIHVSHGEKGH
TEIGNYVTVGHQCLLHACTLMDETFVGMGSIIMDGAIMESGSMVAAGSLVTSNKRIKSGELWLGRPAKFVRILTAEEISH
IRESAIRYAALAEEYIRDLSNKTTF
>Mature_184_residues
GYLSFTMTLLKLKGTFPSTADTYFIAENAFLIGNVTVGTRSSIWYGCNIRGDVNYINIGSYTNIQDCTMIHVSHGEKGHT
EIGNYVTVGHQCLLHACTLMDETFVGMGSIIMDGAIMESGSMVAAGSLVTSNKRIKSGELWLGRPAKFVRILTAEEISHI
RESAIRYAALAEEYIRDLSNKTTF

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=180, Percent_Identity=42.7777777777778, Blast_Score=150, Evalue=7e-38,
Organism=Escherichia coli, GI1787667, Length=166, Percent_Identity=30.1204819277108, Blast_Score=89, Evalue=1e-19,
Organism=Escherichia coli, GI87081681, Length=170, Percent_Identity=32.9411764705882, Blast_Score=87, Evalue=8e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20335; Mature: 20203

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGYLSFTMTLLKLKGTFPSTADTYFIAENAFLIGNVTVGTRSSIWYGCNIRGDVNYINIG
CCHHHHHHEEEHCCCCCCCCCCEEEEECCEEEEEEEEECCCCCEEEECEECCCCCEEEEC
SYTNIQDCTMIHVSHGEKGHTEIGNYVTVGHQCLLHACTLMDETFVGMGSIIMDGAIMES
CCCCCCCEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHCCEEECC
GSMVAAGSLVTSNKRIKSGELWLGRPAKFVRILTAEEISHIRESAIRYAALAEEYIRDLS
CCEEEECEEEECCCCEECCCEEECCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NKTTF
CCCCC
>Mature Secondary Structure 
GYLSFTMTLLKLKGTFPSTADTYFIAENAFLIGNVTVGTRSSIWYGCNIRGDVNYINIG
CHHHHHHEEEHCCCCCCCCCCEEEEECCEEEEEEEEECCCCCEEEECEECCCCCEEEEC
SYTNIQDCTMIHVSHGEKGHTEIGNYVTVGHQCLLHACTLMDETFVGMGSIIMDGAIMES
CCCCCCCEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCHHHHCCEEECC
GSMVAAGSLVTSNKRIKSGELWLGRPAKFVRILTAEEISHIRESAIRYAALAEEYIRDLS
CCEEEECEEEECCCCEECCCEEECCCHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NKTTF
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]