Click here to switch to the map view.

The map label for this gene is 88608778

Identifier: 88608778

GI number: 88608778

Start: 390009

End: 390848

Strand: Reverse

Name: 88608778

Synonym: NSE_0472

Alternate gene names: NA

Gene position: 390848-390009 (Counterclockwise)

Preceding gene: 88608561

Following gene: 88608438

Centisome position: 45.5

GC content: 40.36

Gene sequence:

>840_bases
TTGTTGTTTTCTTTCCGCAAAAGACAAGTTAAAATTGCACGGTTCTCGCAGATCGGGTATTTGATGTCTACGCAATATTT
GTCTACACTAACCGGAAAAATAGCCTACCAAACCTTTGCAGGCCCCTCCGATGATGGAATTCTTTTCATGTGCGGTCGTG
CATCAGATATGACAAGCACCAAATCGGAACATTTGAGGCTTTTTTGCGAAGAAAATGGAATTACTTTTACTAGATTTGAT
TACTTTGGCCATGGCCTATCAGATGGAGATTTCCAAGAGGGCAGTATAAGTATCTGGACCCAAAACGCACTTGAGGTGCT
AGAAAATGTGACCACTGGTAAGCAGATTTTAATCGGCTCAAGCATGAGTGGTTGGATGATGTTCGCATTGGCTAAGGCTT
TACCGGAAAGAGTGAAGGGACTAATTGGAATTGCTGCTGCACCTGATTTTACTGCAGATCTCGACAAACAATTTACTCCT
GAAACACGTCAAAAACTTATAGAGCAAGGTTACTTTATTTTTTCATTTGAAAATGGCAGGGAACTCCTAGTCACTAAGGC
ATTTTTAGAGGATGGTAAAAAAAACCTAATATTAGACAAAAAATTAAGTATTTCTTGTCCAGTTATTCTTCTACATGGTC
TTGCTGATTACATTGTTTCATATCAGAAATCCATCGAGCTACTCGAACATGTAGATGCTCCATATGCAGAAGTACGTCTG
CTCCGTGATGCTGATCACAGAATGAATGATCCTATTAGTCTAACTGTTTTGGAGGAGGCAATAGCTCAAATGCGCAGGCC
CCATTCTTTTCGTCCTCAAGAAAGCAAAAGTGCGGATTAG

Upstream 100 bases:

>100_bases
GATAATATTGAAGCCTGGGGTGGTGTGCCTTCGAGCCTTTTTGGGTTCACTACCCCTGGTCTAGAATCGAGAGGTCAGTA
GGATCGGGGTTTCTACTCCT

Downstream 100 bases:

>100_bases
CAAAAAGTAAGTAAGCCGAGCGCGTTATTAGAGTTAACTTGTTGTTTTCTGAGTATGTCTGTTTTGCTTTTTCAAAGAAA
AAAGTGCTAAGACCTGTGTG

Product: putative hydrolase

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 279; Mature: 279

Protein sequence:

>279_residues
MLFSFRKRQVKIARFSQIGYLMSTQYLSTLTGKIAYQTFAGPSDDGILFMCGRASDMTSTKSEHLRLFCEENGITFTRFD
YFGHGLSDGDFQEGSISIWTQNALEVLENVTTGKQILIGSSMSGWMMFALAKALPERVKGLIGIAAAPDFTADLDKQFTP
ETRQKLIEQGYFIFSFENGRELLVTKAFLEDGKKNLILDKKLSISCPVILLHGLADYIVSYQKSIELLEHVDAPYAEVRL
LRDADHRMNDPISLTVLEEAIAQMRRPHSFRPQESKSAD

Sequences:

>Translated_279_residues
MLFSFRKRQVKIARFSQIGYLMSTQYLSTLTGKIAYQTFAGPSDDGILFMCGRASDMTSTKSEHLRLFCEENGITFTRFD
YFGHGLSDGDFQEGSISIWTQNALEVLENVTTGKQILIGSSMSGWMMFALAKALPERVKGLIGIAAAPDFTADLDKQFTP
ETRQKLIEQGYFIFSFENGRELLVTKAFLEDGKKNLILDKKLSISCPVILLHGLADYIVSYQKSIELLEHVDAPYAEVRL
LRDADHRMNDPISLTVLEEAIAQMRRPHSFRPQESKSAD
>Mature_279_residues
MLFSFRKRQVKIARFSQIGYLMSTQYLSTLTGKIAYQTFAGPSDDGILFMCGRASDMTSTKSEHLRLFCEENGITFTRFD
YFGHGLSDGDFQEGSISIWTQNALEVLENVTTGKQILIGSSMSGWMMFALAKALPERVKGLIGIAAAPDFTADLDKQFTP
ETRQKLIEQGYFIFSFENGRELLVTKAFLEDGKKNLILDKKLSISCPVILLHGLADYIVSYQKSIELLEHVDAPYAEVRL
LRDADHRMNDPISLTVLEEAIAQMRRPHSFRPQESKSAD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI8923001, Length=227, Percent_Identity=32.15859030837, Blast_Score=136, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31445; Mature: 31445

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFSFRKRQVKIARFSQIGYLMSTQYLSTLTGKIAYQTFAGPSDDGILFMCGRASDMTST
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEECCCCCCCCC
KSEHLRLFCEENGITFTRFDYFGHGLSDGDFQEGSISIWTQNALEVLENVTTGKQILIGS
CHHHEEEEECCCCCEEEEEHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCEEEEEC
SMSGWMMFALAKALPERVKGLIGIAAAPDFTADLDKQFTPETRQKLIEQGYFIFSFENGR
CCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCC
ELLVTKAFLEDGKKNLILDKKLSISCPVILLHGLADYIVSYQKSIELLEHVDAPYAEVRL
EEEEEHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LRDADHRMNDPISLTVLEEAIAQMRRPHSFRPQESKSAD
HHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MLFSFRKRQVKIARFSQIGYLMSTQYLSTLTGKIAYQTFAGPSDDGILFMCGRASDMTST
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEECCCCCCCCC
KSEHLRLFCEENGITFTRFDYFGHGLSDGDFQEGSISIWTQNALEVLENVTTGKQILIGS
CHHHEEEEECCCCCEEEEEHHHCCCCCCCCCCCCCEEEEEHHHHHHHHHCCCCCEEEEEC
SMSGWMMFALAKALPERVKGLIGIAAAPDFTADLDKQFTPETRQKLIEQGYFIFSFENGR
CCHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEECCCC
ELLVTKAFLEDGKKNLILDKKLSISCPVILLHGLADYIVSYQKSIELLEHVDAPYAEVRL
EEEEEHHHHHCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LRDADHRMNDPISLTVLEEAIAQMRRPHSFRPQESKSAD
HHHHHHHCCCCEEEHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA