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The map label for this gene is cycM

Identifier: 88608561

GI number: 88608561

Start: 390975

End: 391514

Strand: Reverse

Name: cycM

Synonym: NSE_0473

Alternate gene names: 88608561

Gene position: 391514-390975 (Counterclockwise)

Preceding gene: 88608663

Following gene: 88608778

Centisome position: 45.58

GC content: 40.56

Gene sequence:

>540_bases
ATGAAAGATCTGGAATTTAATAAGCTTTTTGCATCTGTGCTTCTCTTTGGAATAACGGTTCTGTCGGTAAGCAACGTAGT
GGATGCCCTCTACCATCCCAGAGAGGTTACACATTACCAATATGCAGTTACGAGTGCTGAGACTATAGAGTCACAAACAA
ACAAATTTGATCCGGCAGCCGTTGATATGACTACCTTCTTCAAAGATGCAAACATAGAAGAGGGTAAAAAATTAGCTAAA
AAGTGCGTTGCCTGTCACACCTTTGAGAAGGGTGGACATAACAAAGTTGGTCCTAATCTTTGGGATATTTTGGGAAAAAA
TAAAGCCCACTTGGGGGATGCATTTAAATATTCCAAAGCTTTACTGGAAAAAGGTGGTACCTGGGATTATAACTCAATGA
TACATCTACTATACAAACCAGCCCAGTACATCAAGGGAACTAAGATGTCATTTGCGGGACTTTCCAATCCTCAGGATATA
GCAAATCTAATCGCATACCTACGTAGTCTCTCTGATTCACCTGTTCCGCTGCCAGAATAA

Upstream 100 bases:

>100_bases
ACATAAAAAATACATACTCAGGTTTTCATACCCATTGAAGAAAGGTAGTTAGTTCGTATATCATTTCCTCGTGCAGTACG
CCTGTTATCATCATTTTCTC

Downstream 100 bases:

>100_bases
ACATAAATGTTCCTTCTGACTGCCTTGATAATATTGAAGCCTGGGGTGGTGTGCCTTCGAGCCTTTTTGGGTTCACTACC
CCTGGTCTAGAATCGAGAGG

Product: cytochrome c

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 179; Mature: 179

Protein sequence:

>179_residues
MKDLEFNKLFASVLLFGITVLSVSNVVDALYHPREVTHYQYAVTSAETIESQTNKFDPAAVDMTTFFKDANIEEGKKLAK
KCVACHTFEKGGHNKVGPNLWDILGKNKAHLGDAFKYSKALLEKGGTWDYNSMIHLLYKPAQYIKGTKMSFAGLSNPQDI
ANLIAYLRSLSDSPVPLPE

Sequences:

>Translated_179_residues
MKDLEFNKLFASVLLFGITVLSVSNVVDALYHPREVTHYQYAVTSAETIESQTNKFDPAAVDMTTFFKDANIEEGKKLAK
KCVACHTFEKGGHNKVGPNLWDILGKNKAHLGDAFKYSKALLEKGGTWDYNSMIHLLYKPAQYIKGTKMSFAGLSNPQDI
ANLIAYLRSLSDSPVPLPE
>Mature_179_residues
MKDLEFNKLFASVLLFGITVLSVSNVVDALYHPREVTHYQYAVTSAETIESQTNKFDPAAVDMTTFFKDANIEEGKKLAK
KCVACHTFEKGGHNKVGPNLWDILGKNKAHLGDAFKYSKALLEKGGTWDYNSMIHLLYKPAQYIKGTKMSFAGLSNPQDI
ANLIAYLRSLSDSPVPLPE

Specific function: May be involved in electron transfer from bc1 complex to aa3 [H]

COG id: COG3474

COG function: function code C; Cytochrome c2

Gene ontology:

Cell location: Cell membrane; Single-pass type II membrane protein [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the cytochrome c family [H]

Homologues:

Organism=Homo sapiens, GI11128019, Length=105, Percent_Identity=39.0476190476191, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17539604, Length=99, Percent_Identity=36.3636363636364, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17566554, Length=100, Percent_Identity=36, Blast_Score=64, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6320796, Length=105, Percent_Identity=42.8571428571429, Blast_Score=86, Evalue=3e-18,
Organism=Saccharomyces cerevisiae, GI6322508, Length=109, Percent_Identity=41.2844036697248, Blast_Score=86, Evalue=4e-18,
Organism=Drosophila melanogaster, GI17137228, Length=103, Percent_Identity=44.6601941747573, Blast_Score=90, Evalue=6e-19,
Organism=Drosophila melanogaster, GI17137204, Length=101, Percent_Identity=44.5544554455446, Blast_Score=87, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002327
- InterPro:   IPR009056
- InterPro:   IPR003088 [H]

Pfam domain/function: PF00034 Cytochrom_C [H]

EC number: NA

Molecular weight: Translated: 19904; Mature: 19904

Theoretical pI: Translated: 8.21; Mature: 8.21

Prosite motif: PS51007 CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDLEFNKLFASVLLFGITVLSVSNVVDALYHPREVTHYQYAVTSAETIESQTNKFDPAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
VDMTTFFKDANIEEGKKLAKKCVACHTFEKGGHNKVGPNLWDILGKNKAHLGDAFKYSKA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHH
LLEKGGTWDYNSMIHLLYKPAQYIKGTKMSFAGLSNPQDIANLIAYLRSLSDSPVPLPE
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKDLEFNKLFASVLLFGITVLSVSNVVDALYHPREVTHYQYAVTSAETIESQTNKFDPAA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCHH
VDMTTFFKDANIEEGKKLAKKCVACHTFEKGGHNKVGPNLWDILGKNKAHLGDAFKYSKA
HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHH
LLEKGGTWDYNSMIHLLYKPAQYIKGTKMSFAGLSNPQDIANLIAYLRSLSDSPVPLPE
HHHCCCCCCHHHHHHHHHHHHHHHCCCCCHHCCCCCHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]