Click here to switch to the map view.

The map label for this gene is 88608722

Identifier: 88608722

GI number: 88608722

Start: 804704

End: 805501

Strand: Direct

Name: 88608722

Synonym: NSE_0904

Alternate gene names: NA

Gene position: 804704-805501 (Clockwise)

Preceding gene: 88608513

Following gene: 88608049

Centisome position: 93.68

GC content: 35.59

Gene sequence:

>798_bases
ATGTCAGATGAAACACTTTTAAGCGTACTTTCCGATGAAACGCATTTTAATAACTTAACTGATGAACTCATTCTCAGCTT
AATTAAGGATGCGATGTTCAATCAAGTAGTAAAAGGTGAGGGAAAAACAGAATTAAAAGGCATACTTACAGACAATACCG
GCAATTTTAAAGGCCTTATAGAAGGAGAAGGTAAAGTACAGGCAAAGGATGTACTCACTAATGAGAAGTTTAAAGAGCTT
ATAGAAAGTGCTGGCAAGGATAAAGTAAAAGAATTGCTTACAGATGAGAATTTTAAAAAATTATTTGAGGACAATACGAA
AGCCGGTCACGTAAAAGAGGTACTTACAGACACCAATGCTAAGGAAATTCTTACAAATCAAACGGCAAAGGAGGTACTGA
AGAATGATACAGCTAAGGAGATACTCACCAGTGATAAATTTAAAGGGCTAATACAAAGTACGGCTAAGGACAAGCTAAAA
GATATACTTACTAACGACACCTTTAAAGCATTATTTGACGAAGCAGATACTGCCGAAGCCGTTAAAGCAATATTTACCGA
TAATAAATTTAAAGGGCTACTTGAGGAATGCAAGAAGTGTCCAAAGAAAGCCAAAGCACTCAAAGAAAACTTAGAGAAGC
TAAAGGATCTACTTACAGCTAGTAACGGAGATTATAGAACAAAATTACAAGACTTTGGAGAGAGTTTCTGCAATAAAAGA
AAGGAATTAAATAGCAGCGCTGATGATAGTCTAAAGTGCAGTTTTACAGTTACCGATAGCACGAGTGAGACTAAATAA

Upstream 100 bases:

>100_bases
TTTTCATAACAAAAATAGATATAAAATTTAGTAATTTTATAAATTTTTCATAACAGGGAACTATTCTCGTTGCATAAAAT
TTCTAAAACGAAAAATCCCT

Downstream 100 bases:

>100_bases
TTGTAGAATAAGATGTTTTCCACCACTTGGCCAGAACTACACAGATAACTTTCTCTCTATTATTGAGATCTTAGGATTTA
TCTCCACATTGTTATGCAAG

Product: strain-specific surface antigen

Products: NA

Alternate protein names: Strain-Specific Surface Antigen; 50 KDa Strain-Specific Antigen

Number of amino acids: Translated: 265; Mature: 264

Protein sequence:

>265_residues
MSDETLLSVLSDETHFNNLTDELILSLIKDAMFNQVVKGEGKTELKGILTDNTGNFKGLIEGEGKVQAKDVLTNEKFKEL
IESAGKDKVKELLTDENFKKLFEDNTKAGHVKEVLTDTNAKEILTNQTAKEVLKNDTAKEILTSDKFKGLIQSTAKDKLK
DILTNDTFKALFDEADTAEAVKAIFTDNKFKGLLEECKKCPKKAKALKENLEKLKDLLTASNGDYRTKLQDFGESFCNKR
KELNSSADDSLKCSFTVTDSTSETK

Sequences:

>Translated_265_residues
MSDETLLSVLSDETHFNNLTDELILSLIKDAMFNQVVKGEGKTELKGILTDNTGNFKGLIEGEGKVQAKDVLTNEKFKEL
IESAGKDKVKELLTDENFKKLFEDNTKAGHVKEVLTDTNAKEILTNQTAKEVLKNDTAKEILTSDKFKGLIQSTAKDKLK
DILTNDTFKALFDEADTAEAVKAIFTDNKFKGLLEECKKCPKKAKALKENLEKLKDLLTASNGDYRTKLQDFGESFCNKR
KELNSSADDSLKCSFTVTDSTSETK
>Mature_264_residues
SDETLLSVLSDETHFNNLTDELILSLIKDAMFNQVVKGEGKTELKGILTDNTGNFKGLIEGEGKVQAKDVLTNEKFKELI
ESAGKDKVKELLTDENFKKLFEDNTKAGHVKEVLTDTNAKEILTNQTAKEVLKNDTAKEILTSDKFKGLIQSTAKDKLKD
ILTNDTFKALFDEADTAEAVKAIFTDNKFKGLLEECKKCPKKAKALKENLEKLKDLLTASNGDYRTKLQDFGESFCNKRK
ELNSSADDSLKCSFTVTDSTSETK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 29525; Mature: 29393

Theoretical pI: Translated: 5.07; Mature: 5.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDETLLSVLSDETHFNNLTDELILSLIKDAMFNQVVKGEGKTELKGILTDNTGNFKGLI
CCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEECCCCCCCEEE
EGEGKVQAKDVLTNEKFKELIESAGKDKVKELLTDENFKKLFEDNTKAGHVKEVLTDTNA
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHCCCH
KEILTNQTAKEVLKNDTAKEILTSDKFKGLIQSTAKDKLKDILTNDTFKALFDEADTAEA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHH
VKAIFTDNKFKGLLEECKKCPKKAKALKENLEKLKDLLTASNGDYRTKLQDFGESFCNKR
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
KELNSSADDSLKCSFTVTDSTSETK
HHCCCCCCCCEEEEEEEECCCCCCC
>Mature Secondary Structure 
SDETLLSVLSDETHFNNLTDELILSLIKDAMFNQVVKGEGKTELKGILTDNTGNFKGLI
CHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHEEECCCCCCCEEE
EGEGKVQAKDVLTNEKFKELIESAGKDKVKELLTDENFKKLFEDNTKAGHVKEVLTDTNA
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHCCCH
KEILTNQTAKEVLKNDTAKEILTSDKFKGLIQSTAKDKLKDILTNDTFKALFDEADTAEA
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHCCCHHHHH
VKAIFTDNKFKGLLEECKKCPKKAKALKENLEKLKDLLTASNGDYRTKLQDFGESFCNKR
HHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
KELNSSADDSLKCSFTVTDSTSETK
HHCCCCCCCCEEEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA