Click here to switch to the map view.

The map label for this gene is 88608434

Identifier: 88608434

GI number: 88608434

Start: 472503

End: 473567

Strand: Reverse

Name: 88608434

Synonym: NSE_0543

Alternate gene names: NA

Gene position: 473567-472503 (Counterclockwise)

Preceding gene: 88608242

Following gene: 88608566

Centisome position: 55.13

GC content: 38.03

Gene sequence:

>1065_bases
GTGTTTAATTCGTTTCTTCTCTTCCTATCGCGGATCTACCGAGAGATTTCCGATTTGTTCACGCGGTTCTGTGGTCTCTT
TGGAGAGAAGGAGAAGTTTTATAAAGTAATTAAGGATAACCTTCACTCTTCTTCCAATTTCAGAGAGTTTTATAAAAATA
ATGTTTCTCTAGGTCTTTATCATTTCTACAGAGGTAATCTTAGTGATGCTAAGTTTCGTTTTAAGATGCTTAATAGTTTG
TACCGGAATAAACCATTGATTCCGTATAATCTGGCTAGATGCTTTTTGATCTCCGGAGAAACGAAGAAGGCTAGGGCTAT
ATTTGAGAGCATTATCTCCAAAGGGAGAGAATATGAGGAAGTGAGGTTCTTTTTAGATTTTCTTAATGGTCAAAAAATAA
ATAGGATCCCGAACTTCATTGTTAAAGAAAGATTTGAACACTTGGCGCAGGAGTATGTTGAGAGGTTTCTTATAGGTAGA
AGGTACATTGGACATAAGCTTATTTTTGAAGGGCTGAAAGCGATCATCGGTACTAAGCTTACTTCTGATGAGCTTTCGAT
TTTGGATCTTGGTTGTGGAACAGGTGTTTGCACACATTTCCTCAAATTAAGTGGTGTAGTGGGCGAGGCAACAGGTGTTG
ATATATCAGAAAACATGTTGGAAATCGCAAAACGATGTTTAGTTGATGGAAAGCCGGTTTTCAGTTCAGTTATCTGTAAT
GACATAAAGTCATTCCTTCTTTCTCAAGAGAATAACTACGATCTTGTGATAGCAGCTGATTCTTTTTCTTACCTTGGTGA
TTTATCGGATGTTATATCGAGTTGTATTACTATCTTGAAAGATGGAGGTGTACTAGCAGTGTTGGTGCGTGCAGCAAGGC
AACAAGAGGTTCATGATTATGTCTTCGATGTTAATAGATCTCTATTCTATTACTCCTATGACTACATGAAAAATCTGGGT
GAAGGTCTTGCTCTGAAAAATTGCATAGTTAGAAGGTGTACTTTCAAAAGTGCATGCAGCGGAATCATGGCGTTCTATGT
CAAGGGCGATTGTGCCATCTCTTAG

Upstream 100 bases:

>100_bases
CTCTGGTAAACTAATAGTTAAGTCTTCCTTGTATTAATAGCCCTTGTGGAGAAATGTTTTTCCTGTATTTTTAGTTTAGT
TTCTTTGAATATCTGGTTCG

Downstream 100 bases:

>100_bases
CTCTTATGAATAAGCTTTTTTCACCGTTCCCTGGTGTTATAAAATCGATCTTTAATTTTCCTCACAGGCTTTTTTCTTTT
CCTCATAAAAACAAGACTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 354; Mature: 354

Protein sequence:

>354_residues
MFNSFLLFLSRIYREISDLFTRFCGLFGEKEKFYKVIKDNLHSSSNFREFYKNNVSLGLYHFYRGNLSDAKFRFKMLNSL
YRNKPLIPYNLARCFLISGETKKARAIFESIISKGREYEEVRFFLDFLNGQKINRIPNFIVKERFEHLAQEYVERFLIGR
RYIGHKLIFEGLKAIIGTKLTSDELSILDLGCGTGVCTHFLKLSGVVGEATGVDISENMLEIAKRCLVDGKPVFSSVICN
DIKSFLLSQENNYDLVIAADSFSYLGDLSDVISSCITILKDGGVLAVLVRAARQQEVHDYVFDVNRSLFYYSYDYMKNLG
EGLALKNCIVRRCTFKSACSGIMAFYVKGDCAIS

Sequences:

>Translated_354_residues
MFNSFLLFLSRIYREISDLFTRFCGLFGEKEKFYKVIKDNLHSSSNFREFYKNNVSLGLYHFYRGNLSDAKFRFKMLNSL
YRNKPLIPYNLARCFLISGETKKARAIFESIISKGREYEEVRFFLDFLNGQKINRIPNFIVKERFEHLAQEYVERFLIGR
RYIGHKLIFEGLKAIIGTKLTSDELSILDLGCGTGVCTHFLKLSGVVGEATGVDISENMLEIAKRCLVDGKPVFSSVICN
DIKSFLLSQENNYDLVIAADSFSYLGDLSDVISSCITILKDGGVLAVLVRAARQQEVHDYVFDVNRSLFYYSYDYMKNLG
EGLALKNCIVRRCTFKSACSGIMAFYVKGDCAIS
>Mature_354_residues
MFNSFLLFLSRIYREISDLFTRFCGLFGEKEKFYKVIKDNLHSSSNFREFYKNNVSLGLYHFYRGNLSDAKFRFKMLNSL
YRNKPLIPYNLARCFLISGETKKARAIFESIISKGREYEEVRFFLDFLNGQKINRIPNFIVKERFEHLAQEYVERFLIGR
RYIGHKLIFEGLKAIIGTKLTSDELSILDLGCGTGVCTHFLKLSGVVGEATGVDISENMLEIAKRCLVDGKPVFSSVICN
DIKSFLLSQENNYDLVIAADSFSYLGDLSDVISSCITILKDGGVLAVLVRAARQQEVHDYVFDVNRSLFYYSYDYMKNLG
EGLALKNCIVRRCTFKSACSGIMAFYVKGDCAIS

Specific function: Unknown

COG id: COG4976

COG function: function code R; Predicted methyltransferase (contains TPR repeat)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40490; Mature: 40490

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFNSFLLFLSRIYREISDLFTRFCGLFGEKEKFYKVIKDNLHSSSNFREFYKNNVSLGLY
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEH
HFYRGNLSDAKFRFKMLNSLYRNKPLIPYNLARCFLISGETKKARAIFESIISKGREYEE
HHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHEEEECCCCHHHHHHHHHHHHCCCHHHH
VRFFLDFLNGQKINRIPNFIVKERFEHLAQEYVERFLIGRRYIGHKLIFEGLKAIIGTKL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TSDELSILDLGCGTGVCTHFLKLSGVVGEATGVDISENMLEIAKRCLVDGKPVFSSVICN
CCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
DIKSFLLSQENNYDLVIAADSFSYLGDLSDVISSCITILKDGGVLAVLVRAARQQEVHDY
HHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VFDVNRSLFYYSYDYMKNLGEGLALKNCIVRRCTFKSACSGIMAFYVKGDCAIS
HHHCCCHHEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC
>Mature Secondary Structure
MFNSFLLFLSRIYREISDLFTRFCGLFGEKEKFYKVIKDNLHSSSNFREFYKNNVSLGLY
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCHHHHHHHCCCCEEEH
HFYRGNLSDAKFRFKMLNSLYRNKPLIPYNLARCFLISGETKKARAIFESIISKGREYEE
HHHCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHEEEECCCCHHHHHHHHHHHHCCCHHHH
VRFFLDFLNGQKINRIPNFIVKERFEHLAQEYVERFLIGRRYIGHKLIFEGLKAIIGTKL
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
TSDELSILDLGCGTGVCTHFLKLSGVVGEATGVDISENMLEIAKRCLVDGKPVFSSVICN
CCCCCCEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHH
DIKSFLLSQENNYDLVIAADSFSYLGDLSDVISSCITILKDGGVLAVLVRAARQQEVHDY
HHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
VFDVNRSLFYYSYDYMKNLGEGLALKNCIVRRCTFKSACSGIMAFYVKGDCAIS
HHHCCCHHEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9823893 [H]