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The map label for this gene is 88608566

Identifier: 88608566

GI number: 88608566

Start: 471847

End: 472497

Strand: Reverse

Name: 88608566

Synonym: NSE_0542

Alternate gene names: NA

Gene position: 472497-471847 (Counterclockwise)

Preceding gene: 88608434

Following gene: 88608516

Centisome position: 55.01

GC content: 39.32

Gene sequence:

>651_bases
ATGAATAAGCTTTTTTCACCGTTCCCTGGTGTTATAAAATCGATCTTTAATTTTCCTCACAGGCTTTTTTCTTTTCCTCA
TAAAAACAAGACTGATGGGCGGGGAGTCATTTACGCCAGTCAATTTAAACGTTCTGTCAGTACGATTATGGACCTTCTTT
TTTGTGTTCTGATATTGAAGGTTAGTGGGTACTTACTTTCTTTCTTCGTTGATCTGCAGTTTCCAGTCGAGGTTCTTGAG
AGGTATAGATTTAGTCTTCCTATGAGTCAGGCAGAAAGAGCTCTTATCATAGGGTTCTATAAGAGTGTTCTAGTAATACA
AGTATTTCAGTTGATACTTTTGGCAATATTATTTGTTACCTGTTGGCACAGGTTTGGCTGTACGCCAGGCAAGTGGATTT
TAAGGTTGAGGCTTCTTGACGATGAGACTTTGGAAAAGCCTTCGGTCTCTGCATGTATAAAAAGGTTAATTATGGTGCCT
TTGTCTTTGCTTGTGTTTTTCCTTGGCATGTTCTGGAGCATTTTTGATAAGAAAAGTAGAACCTGGCATGATATTTTCGC
CGGAACCGTGGTTGTATCGAATGGTGCTGAAATTTTTCGAAAAGAAGCTGCTTATCATTCTGCAACTTACCAGGGCAAAG
CAGAGGATTGA

Upstream 100 bases:

>100_bases
CTCTGAAAAATTGCATAGTTAGAAGGTGTACTTTCAAAAGTGCATGCAGCGGAATCATGGCGTTCTATGTCAAGGGCGAT
TGTGCCATCTCTTAGCTCTT

Downstream 100 bases:

>100_bases
AATCGTTTCCCGGACTGAAGTGCTCTTTCTCTTTGGAAAACCGGTTTAGTAAATTCTCTTTCCCTGCTACTATTTTAAAG
GATCCTTCTGTGGTACCTGG

Product: RDD family protein

Products: NA

Alternate protein names: Membrane RDD Family Protein

Number of amino acids: Translated: 216; Mature: 216

Protein sequence:

>216_residues
MNKLFSPFPGVIKSIFNFPHRLFSFPHKNKTDGRGVIYASQFKRSVSTIMDLLFCVLILKVSGYLLSFFVDLQFPVEVLE
RYRFSLPMSQAERALIIGFYKSVLVIQVFQLILLAILFVTCWHRFGCTPGKWILRLRLLDDETLEKPSVSACIKRLIMVP
LSLLVFFLGMFWSIFDKKSRTWHDIFAGTVVVSNGAEIFRKEAAYHSATYQGKAED

Sequences:

>Translated_216_residues
MNKLFSPFPGVIKSIFNFPHRLFSFPHKNKTDGRGVIYASQFKRSVSTIMDLLFCVLILKVSGYLLSFFVDLQFPVEVLE
RYRFSLPMSQAERALIIGFYKSVLVIQVFQLILLAILFVTCWHRFGCTPGKWILRLRLLDDETLEKPSVSACIKRLIMVP
LSLLVFFLGMFWSIFDKKSRTWHDIFAGTVVVSNGAEIFRKEAAYHSATYQGKAED
>Mature_216_residues
MNKLFSPFPGVIKSIFNFPHRLFSFPHKNKTDGRGVIYASQFKRSVSTIMDLLFCVLILKVSGYLLSFFVDLQFPVEVLE
RYRFSLPMSQAERALIIGFYKSVLVIQVFQLILLAILFVTCWHRFGCTPGKWILRLRLLDDETLEKPSVSACIKRLIMVP
LSLLVFFLGMFWSIFDKKSRTWHDIFAGTVVVSNGAEIFRKEAAYHSATYQGKAED

Specific function: Unknown

COG id: COG1714

COG function: function code S; Predicted membrane protein/domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24892; Mature: 24892

Theoretical pI: Translated: 10.07; Mature: 10.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKLFSPFPGVIKSIFNFPHRLFSFPHKNKTDGRGVIYASQFKRSVSTIMDLLFCVLILK
CCCCCCCCHHHHHHHHHCHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH
VSGYLLSFFVDLQFPVEVLERYRFSLPMSQAERALIIGFYKSVLVIQVFQLILLAILFVT
HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CWHRFGCTPGKWILRLRLLDDETLEKPSVSACIKRLIMVPLSLLVFFLGMFWSIFDKKSR
HHHHHCCCCHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TWHDIFAGTVVVSNGAEIFRKEAAYHSATYQGKAED
HHHHHHHHHHEECCCHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MNKLFSPFPGVIKSIFNFPHRLFSFPHKNKTDGRGVIYASQFKRSVSTIMDLLFCVLILK
CCCCCCCCHHHHHHHHHCHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHH
VSGYLLSFFVDLQFPVEVLERYRFSLPMSQAERALIIGFYKSVLVIQVFQLILLAILFVT
HHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
CWHRFGCTPGKWILRLRLLDDETLEKPSVSACIKRLIMVPLSLLVFFLGMFWSIFDKKSR
HHHHHCCCCHHHHHHHHHCCCHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TWHDIFAGTVVVSNGAEIFRKEAAYHSATYQGKAED
HHHHHHHHHHEECCCHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA