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The map label for this gene is yfiO [C]

Identifier: 88608266

GI number: 88608266

Start: 818268

End: 818927

Strand: Reverse

Name: yfiO [C]

Synonym: NSE_0923

Alternate gene names: 88608266

Gene position: 818927-818268 (Counterclockwise)

Preceding gene: 88608570

Following gene: 88608619

Centisome position: 95.33

GC content: 42.27

Gene sequence:

>660_bases
TTGTTTGTCTGTTTTCTTTGTGTTCTCTCTGGCTGTGGTGTCGGGAAATCGAAAAAGATTTTGAACAACAAAGTGCGGGA
AGATGAACTGTCAATGTACAACAGTGCGGTTCTGTCACTTGAGAAAAAAAACTACAAGGTTGCAAAGGAACTTTTCGAAA
AAGTGGCTGATATTGCCCCATTTTCTTCCATAGGGGAAAAAGCAAAGGCTTCCTACACCAAGATACTTTACGATGAGGGA
AAGTTCGCTGCGGCAGCAGGTAGCGCCGAAGGATATCTTTTGGACTATCCAGACGGTGAAAAAATGGATCAGGTTCTCAA
CATAAAGGGCAATGCCTATTTTCAGATGTCAAAGGGTTGTACCAATAGTAGTGAATTCGCAGATAAAGCTAGGGACGCAT
TTACGGTTTTAATACAGACTTTTCCTGCATCCGAGTATGTGACAGATGCACAGAAGAAATTACTCGAGATAGACGAAATT
ATGGCAGAAAAAATCTTTTCCATAGGATCCTTTTATTTTAAAGAAATGAGTTACCATGCTGCCATAGCGAGGTTCGATGA
GTTGATACGTGATTATTCTAGGACGAAGCTCTACGATGCTGCTGTGTCGAAGAGAGCGGAGGCATACAAAATGCTTGGCA
TAGACCCGTCCTCGTCGTAG

Upstream 100 bases:

>100_bases
TCCGACGATAAGAACTTTTTTTAATTGCATTGCCGGATTATAATCAACGGTCATATTGTAGTTCGTCATTACCCGAATGA
GAAGAAAGCTATATAACTTT

Downstream 100 bases:

>100_bases
GAGACCTGAGACTGAATAATAATGAATTGTGAGGGTATTATACTTTTTCTTTTCAGGTGTTAGCCTTTCGTTTTTAGGTG
ATCTTTGAGTCGGTGTGTTT

Product: putative competence protein ComL

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 219; Mature: 219

Protein sequence:

>219_residues
MFVCFLCVLSGCGVGKSKKILNNKVREDELSMYNSAVLSLEKKNYKVAKELFEKVADIAPFSSIGEKAKASYTKILYDEG
KFAAAAGSAEGYLLDYPDGEKMDQVLNIKGNAYFQMSKGCTNSSEFADKARDAFTVLIQTFPASEYVTDAQKKLLEIDEI
MAEKIFSIGSFYFKEMSYHAAIARFDELIRDYSRTKLYDAAVSKRAEAYKMLGIDPSSS

Sequences:

>Translated_219_residues
MFVCFLCVLSGCGVGKSKKILNNKVREDELSMYNSAVLSLEKKNYKVAKELFEKVADIAPFSSIGEKAKASYTKILYDEG
KFAAAAGSAEGYLLDYPDGEKMDQVLNIKGNAYFQMSKGCTNSSEFADKARDAFTVLIQTFPASEYVTDAQKKLLEIDEI
MAEKIFSIGSFYFKEMSYHAAIARFDELIRDYSRTKLYDAAVSKRAEAYKMLGIDPSSS
>Mature_219_residues
MFVCFLCVLSGCGVGKSKKILNNKVREDELSMYNSAVLSLEKKNYKVAKELFEKVADIAPFSSIGEKAKASYTKILYDEG
KFAAAAGSAEGYLLDYPDGEKMDQVLNIKGNAYFQMSKGCTNSSEFADKARDAFTVLIQTFPASEYVTDAQKKLLEIDEI
MAEKIFSIGSFYFKEMSYHAAIARFDELIRDYSRTKLYDAAVSKRAEAYKMLGIDPSSS

Specific function: Unknown

COG id: COG4105

COG function: function code R; DNA uptake lipoprotein

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 3 TPR repeats [H]

Homologues:

Organism=Escherichia coli, GI1788947, Length=217, Percent_Identity=22.1198156682028, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017689
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24422; Mature: 24422

Theoretical pI: Translated: 6.06; Mature: 6.06

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVCFLCVLSGCGVGKSKKILNNKVREDELSMYNSAVLSLEKKNYKVAKELFEKVADIAP
CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
FSSIGEKAKASYTKILYDEGKFAAAAGSAEGYLLDYPDGEKMDQVLNIKGNAYFQMSKGC
HHHHHHHHHHHHHHHEECCCCEEEECCCCCCEEEECCCCHHHHHHHCCCCCEEEEECCCC
TNSSEFADKARDAFTVLIQTFPASEYVTDAQKKLLEIDEIMAEKIFSIGSFYFKEMSYHA
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIARFDELIRDYSRTKLYDAAVSKRAEAYKMLGIDPSSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MFVCFLCVLSGCGVGKSKKILNNKVREDELSMYNSAVLSLEKKNYKVAKELFEKVADIAP
CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCC
FSSIGEKAKASYTKILYDEGKFAAAAGSAEGYLLDYPDGEKMDQVLNIKGNAYFQMSKGC
HHHHHHHHHHHHHHHEECCCCEEEECCCCCCEEEECCCCHHHHHHHCCCCCEEEEECCCC
TNSSEFADKARDAFTVLIQTFPASEYVTDAQKKLLEIDEIMAEKIFSIGSFYFKEMSYHA
CCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AIARFDELIRDYSRTKLYDAAVSKRAEAYKMLGIDPSSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11214968 [H]