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The map label for this gene is rimM

Identifier: 88608189

GI number: 88608189

Start: 101917

End: 102408

Strand: Direct

Name: rimM

Synonym: NSE_0124

Alternate gene names: 88608189

Gene position: 101917-102408 (Clockwise)

Preceding gene: 88608585

Following gene: 88608334

Centisome position: 11.86

GC content: 45.93

Gene sequence:

>492_bases
TTGAATGACATGGTTTGTGCGGGGCGGGTTACTTCTACGCATGGCGTAAGGGGTTGTGTACGCTTCCGTTCCTACATGAG
TGTTGATTTTAAATTCCCTGGAATTGATGTATCTATTGGCGGTGTTTCTTACACCGTGTGCGGAGCGTTTAGCCGAGGGT
TCCCCATGTTTGTCCTTACCCTGTCGCGTGTTGGTAGCGCATGTGAAGCTGAAAAGCTGGTAGGGTTCGATGTCTTTTTG
TCTGAGTCATTGCTTCCTCCGTTACAAGTGGGCGAGTATTACTGTAAAGATCTAGTGGGTCTGGCCGTATATGATCTCGA
GGAATGTGTTGGTCATGTTTCGATGTTGTACGATTTCGGTGCGGCTGCTGAGGTACTTGAAATTGTTCTTCTGTCCGGTA
AAAAGGTCATGATACCTTTTACTAGTGCATTTGTGGCGGACATTGATTTAAATAAAAAGCGTTTAGCGGTTGTGTTTCCT
CCAGAGATATAG

Upstream 100 bases:

>100_bases
ACGATCCTCTGCGCGTTTGTCTAGATATAGAACGTATCCGGTACTGGACTAGTGTTGGTGCAAAGCCTACTGAGAGAGTT
GCTAAGTTTGTTGCCTGTCT

Downstream 100 bases:

>100_bases
TTGCTATGTTACTGTTTCTTGGAGTAAGCAACTTTTTATTAGTATTGGTCTCCTTGTACCTAGTTTATGTGAAGGTGCGC
ACAAGTACCATTTTAGAGAA

Product: putative 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 163; Mature: 163

Protein sequence:

>163_residues
MNDMVCAGRVTSTHGVRGCVRFRSYMSVDFKFPGIDVSIGGVSYTVCGAFSRGFPMFVLTLSRVGSACEAEKLVGFDVFL
SESLLPPLQVGEYYCKDLVGLAVYDLEECVGHVSMLYDFGAAAEVLEIVLLSGKKVMIPFTSAFVADIDLNKKRLAVVFP
PEI

Sequences:

>Translated_163_residues
MNDMVCAGRVTSTHGVRGCVRFRSYMSVDFKFPGIDVSIGGVSYTVCGAFSRGFPMFVLTLSRVGSACEAEKLVGFDVFL
SESLLPPLQVGEYYCKDLVGLAVYDLEECVGHVSMLYDFGAAAEVLEIVLLSGKKVMIPFTSAFVADIDLNKKRLAVVFP
PEI
>Mature_163_residues
MNDMVCAGRVTSTHGVRGCVRFRSYMSVDFKFPGIDVSIGGVSYTVCGAFSRGFPMFVLTLSRVGSACEAEKLVGFDVFL
SESLLPPLQVGEYYCKDLVGLAVYDLEECVGHVSMLYDFGAAAEVLEIVLLSGKKVMIPFTSAFVADIDLNKKRLAVVFP
PEI

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_NEOSM (Q2GES2)

Other databases:

- EMBL:   CP000237
- RefSeq:   YP_506024.1
- ProteinModelPortal:   Q2GES2
- SMR:   Q2GES2
- STRING:   Q2GES2
- GeneID:   3931756
- GenomeReviews:   CP000237_GR
- KEGG:   nse:NSE_0124
- TIGR:   NSE_0124
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   GSACEAE
- ProtClustDB:   CLSK2527767
- BioCyc:   NSEN222891:NSE_0124-MONOMER
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 17713; Mature: 17713

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
7.4 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
7.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDMVCAGRVTSTHGVRGCVRFRSYMSVDFKFPGIDVSIGGVSYTVCGAFSRGFPMFVLT
CCCCEECCCCCCCCHHHHHHHHHHHHEEEEECCCEEEEECCEEEEEEHHHCCCCHHHHHH
LSRVGSACEAEKLVGFDVFLSESLLPPLQVGEYYCKDLVGLAVYDLEECVGHVSMLYDFG
HHHHCCCCCHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AAAEVLEIVLLSGKKVMIPFTSAFVADIDLNKKRLAVVFPPEI
CHHHHHHHHHHCCCEEEEEECCCEEEEECCCCCEEEEEECCCC
>Mature Secondary Structure
MNDMVCAGRVTSTHGVRGCVRFRSYMSVDFKFPGIDVSIGGVSYTVCGAFSRGFPMFVLT
CCCCEECCCCCCCCHHHHHHHHHHHHEEEEECCCEEEEECCEEEEEEHHHCCCCHHHHHH
LSRVGSACEAEKLVGFDVFLSESLLPPLQVGEYYCKDLVGLAVYDLEECVGHVSMLYDFG
HHHHCCCCCHHHHCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
AAAEVLEIVLLSGKKVMIPFTSAFVADIDLNKKRLAVVFPPEI
CHHHHHHHHHHCCCEEEEEECCCEEEEECCCCCEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA