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The map label for this gene is rmuC [H]

Identifier: 88608334

GI number: 88608334

Start: 102414

End: 103640

Strand: Direct

Name: rmuC [H]

Synonym: NSE_0125

Alternate gene names: 88608334

Gene position: 102414-103640 (Clockwise)

Preceding gene: 88608189

Following gene: 88608113

Centisome position: 11.92

GC content: 40.75

Gene sequence:

>1227_bases
ATGTTACTGTTTCTTGGAGTAAGCAACTTTTTATTAGTATTGGTCTCCTTGTACCTAGTTTATGTGAAGGTGCGCACAAG
TACCATTTTAGAGAATGAACAGGAGAAGCTAGGTAAAGCTCTCAGAGAATTGTCTGAATCTGAGTCTGCTTGTAGAAAGC
GAGAAGAAGAAAATACTGACCTTATTAGACGGGTTGTCCAACTTGAGTCGGAAAAAAAAAGTTTTGAATACTCACAAAAG
GCCATGTATGCCGAGTTTGAAACTCTGGCTAGCAAGATCCTCGAAAGTAGTGCGGTTCGACTTAAGGAGCAGTCTATTAA
TGATATAGGTGGTCTTCTAGAACCACTTAAACTCAAGATAACTGAATTTGAAAAGCGAATAGAAGAATCATTTCATGCTG
ATATCAAAGAGAGGTATTCTCTGGCAAAAGAAATTGCACGCATGGCCTCGCAGACCGATAAAATGATTGAAGAGGCAAAC
AAGTTGGGGAGGAGTTTGCGAGGTGATAGCAAGACCCAAGGTTCGTGGGGGGAACTTGTTTTAAGCAAGATACTTGAGTG
TTCGGGTCTGCAAAAAGGACGAGACTATATGCTTCAGCAGAAACTTAAAAACGATACTATTCCGGACGTGATAATCAATC
TTCCTGATGGTAAACACCTCGTAGTTGATGCAAAAACCCCACTTAAGCATTATGACCTGTACATCAACACTCATGAAAAA
GAGCACCTAGAGAATTTCTTAAAATCTGTAAGAAGCCACGTAAAAAATCTTTCAGGAAAAGAATATCACTCCGCTCAGGA
ACTTTTTACTCCAGGCTTTGTATTCATGTTTGTCCCGGTCGAGAGCGCTTACGCGCTTGCTCTTTCAACTGATCTTGAAC
TAAAAGAATTAGCTCTACGAAGTAGGGTAATGATTGTCTCACCGAACTCACTTGTAGCGATGCTACAAGCTGTGTCTTCC
GTGTGGAGGATAGTTGATCAAAATAAAAACGCGAATGAAATAGCTAAAAAGGCAGGTGCTATGTACGATAAATTCGTTTT
ATTCGTGGATGAGTTAGCGAAGATTGGGCATTCTATTGCCAATTCTGACAGACTTTACAGAAGTGCTATGAACAAGCTTA
GAGACGGAAGGGGTAGCCTGCTCGGTAGGGCGGAGGATTTAAAAGGTATGGGAATTCAGGCTAATAAAGAAATTAATGAA
GACCGTCTATATCTCAAGTCGGAGTGA

Upstream 100 bases:

>100_bases
GTAAAAAGGTCATGATACCTTTTACTAGTGCATTTGTGGCGGACATTGATTTAAATAAAAAGCGTTTAGCGGTTGTGTTT
CCTCCAGAGATATAGTTGCT

Downstream 100 bases:

>100_bases
TGAGTTTAGCTTAGACAACAACTAGTACTGTGAAGGTTGAACCATTCTAGCAAAGATTCTCTTTTGTTGAAGTAGGTCGG
TCTTGAAATCGAAAACTGGA

Product: RmuC domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 408; Mature: 408

Protein sequence:

>408_residues
MLLFLGVSNFLLVLVSLYLVYVKVRTSTILENEQEKLGKALRELSESESACRKREEENTDLIRRVVQLESEKKSFEYSQK
AMYAEFETLASKILESSAVRLKEQSINDIGGLLEPLKLKITEFEKRIEESFHADIKERYSLAKEIARMASQTDKMIEEAN
KLGRSLRGDSKTQGSWGELVLSKILECSGLQKGRDYMLQQKLKNDTIPDVIINLPDGKHLVVDAKTPLKHYDLYINTHEK
EHLENFLKSVRSHVKNLSGKEYHSAQELFTPGFVFMFVPVESAYALALSTDLELKELALRSRVMIVSPNSLVAMLQAVSS
VWRIVDQNKNANEIAKKAGAMYDKFVLFVDELAKIGHSIANSDRLYRSAMNKLRDGRGSLLGRAEDLKGMGIQANKEINE
DRLYLKSE

Sequences:

>Translated_408_residues
MLLFLGVSNFLLVLVSLYLVYVKVRTSTILENEQEKLGKALRELSESESACRKREEENTDLIRRVVQLESEKKSFEYSQK
AMYAEFETLASKILESSAVRLKEQSINDIGGLLEPLKLKITEFEKRIEESFHADIKERYSLAKEIARMASQTDKMIEEAN
KLGRSLRGDSKTQGSWGELVLSKILECSGLQKGRDYMLQQKLKNDTIPDVIINLPDGKHLVVDAKTPLKHYDLYINTHEK
EHLENFLKSVRSHVKNLSGKEYHSAQELFTPGFVFMFVPVESAYALALSTDLELKELALRSRVMIVSPNSLVAMLQAVSS
VWRIVDQNKNANEIAKKAGAMYDKFVLFVDELAKIGHSIANSDRLYRSAMNKLRDGRGSLLGRAEDLKGMGIQANKEINE
DRLYLKSE
>Mature_408_residues
MLLFLGVSNFLLVLVSLYLVYVKVRTSTILENEQEKLGKALRELSESESACRKREEENTDLIRRVVQLESEKKSFEYSQK
AMYAEFETLASKILESSAVRLKEQSINDIGGLLEPLKLKITEFEKRIEESFHADIKERYSLAKEIARMASQTDKMIEEAN
KLGRSLRGDSKTQGSWGELVLSKILECSGLQKGRDYMLQQKLKNDTIPDVIINLPDGKHLVVDAKTPLKHYDLYINTHEK
EHLENFLKSVRSHVKNLSGKEYHSAQELFTPGFVFMFVPVESAYALALSTDLELKELALRSRVMIVSPNSLVAMLQAVSS
VWRIVDQNKNANEIAKKAGAMYDKFVLFVDELAKIGHSIANSDRLYRSAMNKLRDGRGSLLGRAEDLKGMGIQANKEINE
DRLYLKSE

Specific function: Involved in DNA recombination [H]

COG id: COG1322

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rmuC family [H]

Homologues:

Organism=Escherichia coli, GI1790266, Length=332, Percent_Identity=39.4578313253012, Blast_Score=265, Evalue=4e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003798 [H]

Pfam domain/function: PF02646 RmuC [H]

EC number: NA

Molecular weight: Translated: 46372; Mature: 46372

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLFLGVSNFLLVLVSLYLVYVKVRTSTILENEQEKLGKALRELSESESACRKREEENTD
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
LIRRVVQLESEKKSFEYSQKAMYAEFETLASKILESSAVRLKEQSINDIGGLLEPLKLKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEFEKRIEESFHADIKERYSLAKEIARMASQTDKMIEEANKLGRSLRGDSKTQGSWGELV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
LSKILECSGLQKGRDYMLQQKLKNDTIPDVIINLPDGKHLVVDAKTPLKHYDLYINTHEK
HHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCCEEEEEECCCH
EHLENFLKSVRSHVKNLSGKEYHSAQELFTPGFVFMFVPVESAYALALSTDLELKELALR
HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCHHHHHHHH
SRVMIVSPNSLVAMLQAVSSVWRIVDQNKNANEIAKKAGAMYDKFVLFVDELAKIGHSIA
CCEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSDRLYRSAMNKLRDGRGSLLGRAEDLKGMGIQANKEINEDRLYLKSE
HHHHHHHHHHHHHHCCCHHHCCCHHHCCCCCCCCCCCCCCCCCEEECC
>Mature Secondary Structure
MLLFLGVSNFLLVLVSLYLVYVKVRTSTILENEQEKLGKALRELSESESACRKREEENTD
CEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHH
LIRRVVQLESEKKSFEYSQKAMYAEFETLASKILESSAVRLKEQSINDIGGLLEPLKLKI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TEFEKRIEESFHADIKERYSLAKEIARMASQTDKMIEEANKLGRSLRGDSKTQGSWGELV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
LSKILECSGLQKGRDYMLQQKLKNDTIPDVIINLPDGKHLVVDAKTPLKHYDLYINTHEK
HHHHHHHCCCCHHHHHHHHHHHCCCCCCCEEEECCCCCEEEEECCCCCCCEEEEEECCCH
EHLENFLKSVRSHVKNLSGKEYHSAQELFTPGFVFMFVPVESAYALALSTDLELKELALR
HHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEEEECCCCEEEEEECCCHHHHHHHH
SRVMIVSPNSLVAMLQAVSSVWRIVDQNKNANEIAKKAGAMYDKFVLFVDELAKIGHSIA
CCEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
NSDRLYRSAMNKLRDGRGSLLGRAEDLKGMGIQANKEINEDRLYLKSE
HHHHHHHHHHHHHHCCCHHHCCCHHHCCCCCCCCCCCCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]