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The map label for this gene is virD4

Identifier: 88608007

GI number: 88608007

Start: 658571

End: 660496

Strand: Reverse

Name: virD4

Synonym: NSE_0739

Alternate gene names: 88608007

Gene position: 660496-658571 (Counterclockwise)

Preceding gene: 88608308

Following gene: 88608162

Centisome position: 76.89

GC content: 42.06

Gene sequence:

>1926_bases
ATGAGACAGCTTAGGAATATTATAACGATATTTTTTCTTCTGGCGTTCATTTTTGCCTTGGCCCTTTACATGTCAGCGGC
TATTTTTGTGGTTGCAGTTTGGGGAATAGAACACCTCAATTTCCGTGATTTGCAACCATCTTTGGACGGGTTTCCTACAC
GTCTTTGGCCTACAATTTTTGTCTATATAAGTGATCTTTTCAATAATTGGGATGCTTGGGCCCCAGCTGTAAAGATAAAA
CTTGCTGTCTCGTTAGGCATTCCGTTTGGAATACTCGGAGTCGTTTTTTATATGCTCCGTGCACCGATTATGGAGTGGCG
CCCATTCAAGAAGAAAGAATCTGTGCACGGTGATGCAAGGTGGGCAACAGAAAGGGAAATAAGGAAAATCGGGCTTAGAA
GTCGTAAAGGGATACTGCTTGGTAAAGATAAGAAAGGTTTCCTCATTGCAGGGGGGTTTCAACACGCTTTACTGTTCGCT
CCAACTGGTTCTGGGAAGGGTGTTGGGTTTGTTATCCCAAATCTTCTCTTCTGGGAAGATTCTGTTGTTGTTCACGATAT
CAAACTTGAGAACTTCACCTTAACTAGCGGTTATAGGAAAAAGATGGGTCAGAAGGTCTATTGTTGGAGTCCAGCTGATC
CAGATGGTAAAAGTCACTGCTATAATCCGTTGGATTGGGTTAGTTCAAAGCCGGGGCAGATGGTAGATGATGTTCAGAAA
ATCGCTAACCTCCTAATGCCCGAACAAGATTTCTGGGTCAATGAAGCCCGAAGTCTTTTTCTGGGGGTAGTACTGTACAT
TCTTGCGGTACCAGAAAAGGTAAAGTCCTTTGGAGAGGTGGTAAGGGTGATGAGAAGCGATGATGTTACGTATAGTCTCG
CTGTTGCGTTAGATACAATGGGTAAAAAGATTCACCCAGTTGCCTATATGAACATTGCTGCTTTTCTTCAAAAGGCAGAC
AAAGAAAGATCTGGTGTGATATCGACAATGAACTCCTCGCTCGAATTATGGGCAAACCCACTTATTGATACCACGACGGC
TACTAGTGACTTTAATTTTATGAAGTTCAAAAGAGAACTTACGACGGTGTATGTGGGCCTCACACCAGACAACTTGACGA
GATTACAGCCGCTTATGCAGGTTTTTTATCAACAAGCAACAGAGTTTTTGTGTAGGCATCTTCCACAAAAAGACGAACCA
TATGGTGTTTTGTTTATGATGGACGAGTTTCCTACCCTTGGTGAGATGGAGCAGTTTAAAACTGGTATTGCATATTTTCG
TGGATATAACGTACGTCTGTTTCTTATCATCCAAGATACAGAGCAGCTAAAAGGTATCTACGAGGAAGCAGGGATGAACT
CTTTTCTCTCGAACTCTACCTACAGAATTACTTTTGCTGCAAACAACATAGAAACGGCAAATTTAATTTCGCAGTTGGTT
GGTAATAAGACAGTTGCACAGGAATCGCTTAACAAACCGAAGTTTCTTGACTTGAATCCTGCATCGAGGTCGCTGCATAT
TTCCGAGACTCAGCGTGCGCTTCTGTTGCCTCAGGAGGTGATAATGTTGCCGCGTGACCAGCAGATCCTATTGATTGAAT
CTACTTATCCTATCAAATCAAAAAAGATACGGTATTTCGAAGATAGTTTTTTCACGAAAAAAATCCTCGATCCTATTTCT
ATCCCGACCCAGGAACCATTTGATCCCAAAAAATTTGAAGAAAAGATGCGTAAGGAAAGGGAGGCTAAGGAATTAGAAGA
GAATGCTCCATTGGCTATAGATGAAGATCAAGCGCTTCTTGAAGACGAGTCTCTTTTGGATGATTCCGATTATGAAGATG
GAGACTTTGAGGATCTAGATGAAGAAGAGGATCTGTCCGATTTTTTAGATGACACGGACGAAGAGAACGAAGAAAACATG
GTATGA

Upstream 100 bases:

>100_bases
AGCGGGTCATGGGAAGAGATTTGTTTCTGAGATCTTGCTTACCAAGGATTTGCTTGAGAGTGGTAGTTGAGCATGGGCAT
TGGGTGAGTCAGAGCGCGTT

Downstream 100 bases:

>100_bases
GATTGCGTACTTTCCAAGATCTACATCTTGCTGTTATTTTTCTTTCTACATACCAAGACAGGAACAAGTATTAGCCTAGT
AGGTTGGTTTAGTGATTTTT

Product: type IV secretion system component VirD4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 641; Mature: 641

Protein sequence:

>641_residues
MRQLRNIITIFFLLAFIFALALYMSAAIFVVAVWGIEHLNFRDLQPSLDGFPTRLWPTIFVYISDLFNNWDAWAPAVKIK
LAVSLGIPFGILGVVFYMLRAPIMEWRPFKKKESVHGDARWATEREIRKIGLRSRKGILLGKDKKGFLIAGGFQHALLFA
PTGSGKGVGFVIPNLLFWEDSVVVHDIKLENFTLTSGYRKKMGQKVYCWSPADPDGKSHCYNPLDWVSSKPGQMVDDVQK
IANLLMPEQDFWVNEARSLFLGVVLYILAVPEKVKSFGEVVRVMRSDDVTYSLAVALDTMGKKIHPVAYMNIAAFLQKAD
KERSGVISTMNSSLELWANPLIDTTTATSDFNFMKFKRELTTVYVGLTPDNLTRLQPLMQVFYQQATEFLCRHLPQKDEP
YGVLFMMDEFPTLGEMEQFKTGIAYFRGYNVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLISQLV
GNKTVAQESLNKPKFLDLNPASRSLHISETQRALLLPQEVIMLPRDQQILLIESTYPIKSKKIRYFEDSFFTKKILDPIS
IPTQEPFDPKKFEEKMRKEREAKELEENAPLAIDEDQALLEDESLLDDSDYEDGDFEDLDEEEDLSDFLDDTDEENEENM
V

Sequences:

>Translated_641_residues
MRQLRNIITIFFLLAFIFALALYMSAAIFVVAVWGIEHLNFRDLQPSLDGFPTRLWPTIFVYISDLFNNWDAWAPAVKIK
LAVSLGIPFGILGVVFYMLRAPIMEWRPFKKKESVHGDARWATEREIRKIGLRSRKGILLGKDKKGFLIAGGFQHALLFA
PTGSGKGVGFVIPNLLFWEDSVVVHDIKLENFTLTSGYRKKMGQKVYCWSPADPDGKSHCYNPLDWVSSKPGQMVDDVQK
IANLLMPEQDFWVNEARSLFLGVVLYILAVPEKVKSFGEVVRVMRSDDVTYSLAVALDTMGKKIHPVAYMNIAAFLQKAD
KERSGVISTMNSSLELWANPLIDTTTATSDFNFMKFKRELTTVYVGLTPDNLTRLQPLMQVFYQQATEFLCRHLPQKDEP
YGVLFMMDEFPTLGEMEQFKTGIAYFRGYNVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLISQLV
GNKTVAQESLNKPKFLDLNPASRSLHISETQRALLLPQEVIMLPRDQQILLIESTYPIKSKKIRYFEDSFFTKKILDPIS
IPTQEPFDPKKFEEKMRKEREAKELEENAPLAIDEDQALLEDESLLDDSDYEDGDFEDLDEEEDLSDFLDDTDEENEENM
V
>Mature_641_residues
MRQLRNIITIFFLLAFIFALALYMSAAIFVVAVWGIEHLNFRDLQPSLDGFPTRLWPTIFVYISDLFNNWDAWAPAVKIK
LAVSLGIPFGILGVVFYMLRAPIMEWRPFKKKESVHGDARWATEREIRKIGLRSRKGILLGKDKKGFLIAGGFQHALLFA
PTGSGKGVGFVIPNLLFWEDSVVVHDIKLENFTLTSGYRKKMGQKVYCWSPADPDGKSHCYNPLDWVSSKPGQMVDDVQK
IANLLMPEQDFWVNEARSLFLGVVLYILAVPEKVKSFGEVVRVMRSDDVTYSLAVALDTMGKKIHPVAYMNIAAFLQKAD
KERSGVISTMNSSLELWANPLIDTTTATSDFNFMKFKRELTTVYVGLTPDNLTRLQPLMQVFYQQATEFLCRHLPQKDEP
YGVLFMMDEFPTLGEMEQFKTGIAYFRGYNVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLISQLV
GNKTVAQESLNKPKFLDLNPASRSLHISETQRALLLPQEVIMLPRDQQILLIESTYPIKSKKIRYFEDSFFTKKILDPIS
IPTQEPFDPKKFEEKMRKEREAKELEENAPLAIDEDQALLEDESLLDDSDYEDGDFEDLDEEEDLSDFLDDTDEENEENM
V

Specific function: Unknown

COG id: COG3505

COG function: function code U; Type IV secretory pathway, VirD4 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the virD4/traG family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003688 [H]

Pfam domain/function: PF02534 TraG [H]

EC number: NA

Molecular weight: Translated: 73353; Mature: 73353

Theoretical pI: Translated: 4.76; Mature: 4.76

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRQLRNIITIFFLLAFIFALALYMSAAIFVVAVWGIEHLNFRDLQPSLDGFPTRLWPTIF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
VYISDLFNNWDAWAPAVKIKLAVSLGIPFGILGVVFYMLRAPIMEWRPFKKKESVHGDAR
HHHHHHHCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCHHHCCCCCCHHCCCCCHH
WATEREIRKIGLRSRKGILLGKDKKGFLIAGGFQHALLFAPTGSGKGVGFVIPNLLFWED
HHHHHHHHHHCCCCCCCEEEECCCCCEEEECCCCEEEEEEECCCCCCEEEECCCEEEECC
SVVVHDIKLENFTLTSGYRKKMGQKVYCWSPADPDGKSHCYNPLDWVSSKPGQMVDDVQK
CEEEEEEEECCEEECCHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCHHHHHHHH
IANLLMPEQDFWVNEARSLFLGVVLYILAVPEKVKSFGEVVRVMRSDDVTYSLAVALDTM
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEHEEHHHHC
GKKIHPVAYMNIAAFLQKADKERSGVISTMNSSLELWANPLIDTTTATSDFNFMKFKREL
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHCCCCCCCCCCCCCHHHHHHHEE
TTVYVGLTPDNLTRLQPLMQVFYQQATEFLCRHLPQKDEPYGVLFMMDEFPTLGEMEQFK
EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHH
TGIAYFRGYNVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLISQLV
HHHHHHCCCCEEEEEEECCHHHHHHHHHHHCCHHHHCCCEEEEEEEECCCCHHHHHHHHH
GNKTVAQESLNKPKFLDLNPASRSLHISETQRALLLPQEVIMLPRDQQILLIESTYPIKS
CCHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHCCHHHHCCCCCCEEEEEECCCCCCC
KKIRYFEDSFFTKKILDPISIPTQEPFDPKKFEEKMRKEREAKELEENAPLAIDEDQALL
CCEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHH
EDESLLDDSDYEDGDFEDLDEEEDLSDFLDDTDEENEENMV
HHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MRQLRNIITIFFLLAFIFALALYMSAAIFVVAVWGIEHLNFRDLQPSLDGFPTRLWPTIF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHH
VYISDLFNNWDAWAPAVKIKLAVSLGIPFGILGVVFYMLRAPIMEWRPFKKKESVHGDAR
HHHHHHHCCCCCCCCEEEEEEEEEECCCHHHHHHHHHHHHCCHHHCCCCCCHHCCCCCHH
WATEREIRKIGLRSRKGILLGKDKKGFLIAGGFQHALLFAPTGSGKGVGFVIPNLLFWED
HHHHHHHHHHCCCCCCCEEEECCCCCEEEECCCCEEEEEEECCCCCCEEEECCCEEEECC
SVVVHDIKLENFTLTSGYRKKMGQKVYCWSPADPDGKSHCYNPLDWVSSKPGQMVDDVQK
CEEEEEEEECCEEECCHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHCCCCCHHHHHHHH
IANLLMPEQDFWVNEARSLFLGVVLYILAVPEKVKSFGEVVRVMRSDDVTYSLAVALDTM
HHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEHEEHHHHC
GKKIHPVAYMNIAAFLQKADKERSGVISTMNSSLELWANPLIDTTTATSDFNFMKFKREL
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHCCCCCCCCCCCCCHHHHHHHEE
TTVYVGLTPDNLTRLQPLMQVFYQQATEFLCRHLPQKDEPYGVLFMMDEFPTLGEMEQFK
EEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCHHHHH
TGIAYFRGYNVRLFLIIQDTEQLKGIYEEAGMNSFLSNSTYRITFAANNIETANLISQLV
HHHHHHCCCCEEEEEEECCHHHHHHHHHHHCCHHHHCCCEEEEEEEECCCCHHHHHHHHH
GNKTVAQESLNKPKFLDLNPASRSLHISETQRALLLPQEVIMLPRDQQILLIESTYPIKS
CCHHHHHHHCCCCCEEECCCCCCCEEECHHHHHHHCCHHHHCCCCCCEEEEEECCCCCCC
KKIRYFEDSFFTKKILDPISIPTQEPFDPKKFEEKMRKEREAKELEENAPLAIDEDQALL
CCEEHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHH
EDESLLDDSDYEDGDFEDLDEEEDLSDFLDDTDEENEENMV
HHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2194232; 11743193; 11743194 [H]