| Definition | Neorickettsia sennetsu str. Miyayama chromosome, complete genome. |
|---|---|
| Accession | NC_007798 |
| Length | 859,006 |
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The map label for this gene is virB6
Identifier: 88607976
GI number: 88607976
Start: 768308
End: 770929
Strand: Reverse
Name: virB6
Synonym: NSE_0862
Alternate gene names: NA
Gene position: 770929-768308 (Counterclockwise)
Preceding gene: 88608419
Following gene: 88607975
Centisome position: 89.75
GC content: 43.36
Gene sequence:
>2622_bases ATGAAGCTTTTTCTCAGAGGAATACTTTTACTCTTAGCACTCAACCTTTTAGACAATAATATACTGCTTCTTAAGAGCGG GTTCTTCTTTTCTCACGCGTATGCAGAAGAGGTTGTGCTACCCAAAGTAATGCCGGGTGAAGCATCTTATCCTGAATGTG GAACCGACGTAGCTTTTGCACTCATTGGTCTGATTGCTGGTATTGTAGCTGGAATAATGATTATTGTTGGCAGCGGTGGA ATTATAGTTGCTGTTGGTCTTGGATTGATAGCTGCTGCGGTAGTTTCAGCGATGCAACTGGTAGGCTGTCTTTGGTCATT TGTTAGAAACCCGGTTCTTAGAACGCGTACTGGATACTATAAATACTGCCAGGATGAAGGTGCGGGAGCTGAGGTCTGCT CCGATGAGAAAATGGTCTATTGCGAGAAGAAGGAGAGCAATGAAATCAATAGTAATGCGGGGGGTTGCACGTATGCTTGG CCACGCAACAGAGCAGAGAACGGAAAATACATTGAAATATGTTACAGAGAACCTTTTGATTGGGGTTATATCTCCAGAGC AGGGCAGGAGACTCAATTGGATAGCAGGGAAAGTAGTTTCACTGCAATTAATCTTGGTGTGTTGGGTGGTGAGAACAAAA TCCAAAGTTTGGATACCCTTATAGACATGAAAAGAAAGGTAAGTGTGCGCTCGATACAGTGTGTGACACTGAAAAACATG GAAAGTAGGAGAATAGGTCCTTATGTTTTTTCTGCTGAGTACGATGGATCCAAGCTTTGCGGCTATGTCACGTTTTCTAG AAGGGCGAAAGTTGGCTGTCATTTGAGAGATCCCGCCGACCCTTCCCCTATGTGTATCAAATCGAAGCCGATTTATGATC CTGACGATCTTTCCAGGGTGTTAAGTTACGATAATTCAGGTTGTTTCAGTTGTTACATAAGTAGCGCATGTTACGGTGTG ACAGGCTTGATTGCGAAGGCCCAGTTCCCGATGACATCTTTGGTGGTCCAGTGTATTAGGGAGTCATTGAGAAACATTTT GGTTTCGGACTGTAAAGAAAGTGAGGGTTTCTTAGTTATTGCACAGAAAAAGTTAAAGGCTGCCGTAGAGGCTGTATTAG TTCTCGCGGTTCTGCTATTTGGCTTCAAACTTCTTAGTGGTGGTGTAAGCGGTCTACAAGAATGGACAATGTTTGTCCTT AAAATTGCTGCAATTGCTTATTTCACGATAGGTGATGGAATGATCGTCTACTATGATAGATTGCTCACGCTCTCTACCGG TCTAGCGGATATCGTCTACAGCGGAGGAGGAAAAAAAGATGTGTGTGACTTCGACTCATCCGAATATAATGAACTTGTGG TTACAAAGCCCCTATCTGCCGAAGAAAGGGGGTGCTTTGAGGCTTTTGTCAAGTCAGGGCATAAAAGAGACTTTGCTGAA TTGAAGAAGTTTATTGATTCAGGTGTTTTAAGTTGCTCCTCACTGAAACTAGGACAAGGTGGTAACTTACCTATATTCTC AAAGTTAGAATTGAAAAATCTCTCCTACATGACTCTTTGGGATAGGTTAGATTGTAGGGTGGCTTTCTACTTGGGTAGTG CTCTTGGTAATCCGACTGTTGCAGGTGGTGGTGTAGCGACTGTCATAACGGCTGGTGCGATAAGTGCGCTTGGCGCAGGG ATATATATGGTACCCGTATTGATCTTGGCATTCTTTTTTGCAGGACAGTTGGTAATTGCCTTGTTGGTCCTAATGTACGT GATACTCATGTTCCTCATTATCCTGTGGATAGTACATCTTTTCATACTGGCAATAATCGCGCTTACGATACTGATACTTT TTTCTCCGATTTTTATCCCGATGATTTTGTTTCAGGTAACGAAACCTTTCTTCGAAGGCTGGTTGAAAGAAGTGATGGCT TACTCGCTGTATCCTATAGTTTTGTTTGGATTTTTAGCCCTTGTTTTTTCTGTTTTTGACAAGCTCTTCTTTGATGATCT GACCTTCCAGCGCGTTTCTAAGTTAGATGGTGTACGGAGTTACTACAGCTATAAGCTTGCGAATCCAAACCAGTGTAAAG AGAAAAATGCAGACGGAGAGTTGAGGGATTCTTCAGTTCTTGCATGTGTAATTCAGGAAATGTCACTTACACAGAAACCG TTACTTTTTGGTATTTATGTCACTACGATTGCGAGTGACCCTTCATCCACTAGTGTTTTATGGATAAAGCTGGGCATGAT GGCTTTAATGCTATTCTTGTTTTTCCACTTCCTTGGTATTTTAGGTGGCTTGGCTGCAGAGCTCGTTGGCAACTTCCGAG CAGATCTTTCAAGACATGTCAGCAGTCCTCAATCCATGGCAAAAAAACTCGCTGCTATTTCACTTAATACTTCTAAGACC TTGGTTGAAGGAGGAAAGAACATAGGCAAGAAACTTGGAGGAAAACGTGCGGGACCAGAGGGCTCTGGTGATCAAACCGT TAAAGCTAAGACCTTGGTTGAAGGAGGAAAGAACATAGGCAAGAAACTTGGAGGAAAACGTGCGGGACCAGAGGGCTCTG GTGATCAAACCGTTAAAGGCGCTGGAGAAGGTGGTGCAGGCGGAATGGGTGGTGCAGGTTAA
Upstream 100 bases:
>100_bases ATACGGTACTACTCCTGCACCGGATTATGGAAGAGTATGGTGAAGAACCAGTAAAGTGGCTTCCAGTTTTTTATGAAAAA GTGAAGGAGTTGGATCAGCA
Downstream 100 bases:
>100_bases GCAAATAGTATACAAGATGCTGACTAAGGTCAGAATCAGAGCTGGAGGGGTTGCTGTGCCCAACAAAGGTTTTGCACTTG TTTGTTTGTTGCTCCTTCTT
Product: type IV secretion system protein VirB6
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 873; Mature: 873
Protein sequence:
>873_residues MKLFLRGILLLLALNLLDNNILLLKSGFFFSHAYAEEVVLPKVMPGEASYPECGTDVAFALIGLIAGIVAGIMIIVGSGG IIVAVGLGLIAAAVVSAMQLVGCLWSFVRNPVLRTRTGYYKYCQDEGAGAEVCSDEKMVYCEKKESNEINSNAGGCTYAW PRNRAENGKYIEICYREPFDWGYISRAGQETQLDSRESSFTAINLGVLGGENKIQSLDTLIDMKRKVSVRSIQCVTLKNM ESRRIGPYVFSAEYDGSKLCGYVTFSRRAKVGCHLRDPADPSPMCIKSKPIYDPDDLSRVLSYDNSGCFSCYISSACYGV TGLIAKAQFPMTSLVVQCIRESLRNILVSDCKESEGFLVIAQKKLKAAVEAVLVLAVLLFGFKLLSGGVSGLQEWTMFVL KIAAIAYFTIGDGMIVYYDRLLTLSTGLADIVYSGGGKKDVCDFDSSEYNELVVTKPLSAEERGCFEAFVKSGHKRDFAE LKKFIDSGVLSCSSLKLGQGGNLPIFSKLELKNLSYMTLWDRLDCRVAFYLGSALGNPTVAGGGVATVITAGAISALGAG IYMVPVLILAFFFAGQLVIALLVLMYVILMFLIILWIVHLFILAIIALTILILFSPIFIPMILFQVTKPFFEGWLKEVMA YSLYPIVLFGFLALVFSVFDKLFFDDLTFQRVSKLDGVRSYYSYKLANPNQCKEKNADGELRDSSVLACVIQEMSLTQKP LLFGIYVTTIASDPSSTSVLWIKLGMMALMLFLFFHFLGILGGLAAELVGNFRADLSRHVSSPQSMAKKLAAISLNTSKT LVEGGKNIGKKLGGKRAGPEGSGDQTVKAKTLVEGGKNIGKKLGGKRAGPEGSGDQTVKGAGEGGAGGMGGAG
Sequences:
>Translated_873_residues MKLFLRGILLLLALNLLDNNILLLKSGFFFSHAYAEEVVLPKVMPGEASYPECGTDVAFALIGLIAGIVAGIMIIVGSGG IIVAVGLGLIAAAVVSAMQLVGCLWSFVRNPVLRTRTGYYKYCQDEGAGAEVCSDEKMVYCEKKESNEINSNAGGCTYAW PRNRAENGKYIEICYREPFDWGYISRAGQETQLDSRESSFTAINLGVLGGENKIQSLDTLIDMKRKVSVRSIQCVTLKNM ESRRIGPYVFSAEYDGSKLCGYVTFSRRAKVGCHLRDPADPSPMCIKSKPIYDPDDLSRVLSYDNSGCFSCYISSACYGV TGLIAKAQFPMTSLVVQCIRESLRNILVSDCKESEGFLVIAQKKLKAAVEAVLVLAVLLFGFKLLSGGVSGLQEWTMFVL KIAAIAYFTIGDGMIVYYDRLLTLSTGLADIVYSGGGKKDVCDFDSSEYNELVVTKPLSAEERGCFEAFVKSGHKRDFAE LKKFIDSGVLSCSSLKLGQGGNLPIFSKLELKNLSYMTLWDRLDCRVAFYLGSALGNPTVAGGGVATVITAGAISALGAG IYMVPVLILAFFFAGQLVIALLVLMYVILMFLIILWIVHLFILAIIALTILILFSPIFIPMILFQVTKPFFEGWLKEVMA YSLYPIVLFGFLALVFSVFDKLFFDDLTFQRVSKLDGVRSYYSYKLANPNQCKEKNADGELRDSSVLACVIQEMSLTQKP LLFGIYVTTIASDPSSTSVLWIKLGMMALMLFLFFHFLGILGGLAAELVGNFRADLSRHVSSPQSMAKKLAAISLNTSKT LVEGGKNIGKKLGGKRAGPEGSGDQTVKAKTLVEGGKNIGKKLGGKRAGPEGSGDQTVKGAGEGGAGGMGGAG >Mature_873_residues MKLFLRGILLLLALNLLDNNILLLKSGFFFSHAYAEEVVLPKVMPGEASYPECGTDVAFALIGLIAGIVAGIMIIVGSGG IIVAVGLGLIAAAVVSAMQLVGCLWSFVRNPVLRTRTGYYKYCQDEGAGAEVCSDEKMVYCEKKESNEINSNAGGCTYAW PRNRAENGKYIEICYREPFDWGYISRAGQETQLDSRESSFTAINLGVLGGENKIQSLDTLIDMKRKVSVRSIQCVTLKNM ESRRIGPYVFSAEYDGSKLCGYVTFSRRAKVGCHLRDPADPSPMCIKSKPIYDPDDLSRVLSYDNSGCFSCYISSACYGV TGLIAKAQFPMTSLVVQCIRESLRNILVSDCKESEGFLVIAQKKLKAAVEAVLVLAVLLFGFKLLSGGVSGLQEWTMFVL KIAAIAYFTIGDGMIVYYDRLLTLSTGLADIVYSGGGKKDVCDFDSSEYNELVVTKPLSAEERGCFEAFVKSGHKRDFAE LKKFIDSGVLSCSSLKLGQGGNLPIFSKLELKNLSYMTLWDRLDCRVAFYLGSALGNPTVAGGGVATVITAGAISALGAG IYMVPVLILAFFFAGQLVIALLVLMYVILMFLIILWIVHLFILAIIALTILILFSPIFIPMILFQVTKPFFEGWLKEVMA YSLYPIVLFGFLALVFSVFDKLFFDDLTFQRVSKLDGVRSYYSYKLANPNQCKEKNADGELRDSSVLACVIQEMSLTQKP LLFGIYVTTIASDPSSTSVLWIKLGMMALMLFLFFHFLGILGGLAAELVGNFRADLSRHVSSPQSMAKKLAAISLNTSKT LVEGGKNIGKKLGGKRAGPEGSGDQTVKAKTLVEGGKNIGKKLGGKRAGPEGSGDQTVKGAGEGGAGGMGGAG
Specific function: Unknown
COG id: COG3704
COG function: function code U; Type IV secretory pathway, VirB6 components
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbL/virB6 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007688 [H]
Pfam domain/function: PF04610 TrbL [H]
EC number: NA
Molecular weight: Translated: 94471; Mature: 94471
Theoretical pI: Translated: 8.34; Mature: 8.34
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 5.2 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 5.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLFLRGILLLLALNLLDNNILLLKSGFFFSHAYAEEVVLPKVMPGEASYPECGTDVAFA CHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH LIGLIAGIVAGIMIIVGSGGIIVAVGLGLIAAAVVSAMQLVGCLWSFVRNPVLRTRTGYY HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHH KYCQDEGAGAEVCSDEKMVYCEKKESNEINSNAGGCTYAWPRNRAENGKYIEICYREPFD HHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCCC WGYISRAGQETQLDSRESSFTAINLGVLGGENKIQSLDTLIDMKRKVSVRSIQCVTLKNM CCHHHCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCHHEEEEEEECCC ESRRIGPYVFSAEYDGSKLCGYVTFSRRAKVGCHLRDPADPSPMCIKSKPIYDPDDLSRV CCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCEECCCCCCCCCEECCCCCCCHHHHHHH LSYDNSGCFSCYISSACYGVTGLIAKAQFPMTSLVVQCIRESLRNILVSDCKESEGFLVI HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE AQKKLKAAVEAVLVLAVLLFGFKLLSGGVSGLQEWTMFVLKIAAIAYFTIGDGMIVYYDR EHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHH LLTLSTGLADIVYSGGGKKDVCDFDSSEYNELVVTKPLSAEERGCFEAFVKSGHKRDFAE HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCHHH LKKFIDSGVLSCSSLKLGQGGNLPIFSKLELKNLSYMTLWDRLDCRVAFYLGSALGNPTV HHHHHHHCCCCCCCEECCCCCCCCEEEEECCCCCCHHHHHHHHCHHHHHHHHHHCCCCCC AGGGVATVITAGAISALGAGIYMVPVLILAFFFAGQLVIALLVLMYVILMFLIILWIVHL CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FILAIIALTILILFSPIFIPMILFQVTKPFFEGWLKEVMAYSLYPIVLFGFLALVFSVFD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLFFDDLTFQRVSKLDGVRSYYSYKLANPNQCKEKNADGELRDSSVLACVIQEMSLTQKP HHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCC LLFGIYVTTIASDPSSTSVLWIKLGMMALMLFLFFHFLGILGGLAAELVGNFRADLSRHV HHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SSPQSMAKKLAAISLNTSKTLVEGGKNIGKKLGGKRAGPEGSGDQTVKAKTLVEGGKNIG CCHHHHHHHHHHHCCCCHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCHHHH KKLGGKRAGPEGSGDQTVKGAGEGGAGGMGGAG HHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC >Mature Secondary Structure MKLFLRGILLLLALNLLDNNILLLKSGFFFSHAYAEEVVLPKVMPGEASYPECGTDVAFA CHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHH LIGLIAGIVAGIMIIVGSGGIIVAVGLGLIAAAVVSAMQLVGCLWSFVRNPVLRTRTGYY HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHH KYCQDEGAGAEVCSDEKMVYCEKKESNEINSNAGGCTYAWPRNRAENGKYIEICYREPFD HHHCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCEECCCCCCCCCCCEEEEEECCCCC WGYISRAGQETQLDSRESSFTAINLGVLGGENKIQSLDTLIDMKRKVSVRSIQCVTLKNM CCHHHCCCCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHCCHHEEEEEEECCC ESRRIGPYVFSAEYDGSKLCGYVTFSRRAKVGCHLRDPADPSPMCIKSKPIYDPDDLSRV CCCCCCCEEEEECCCCCCEEEEEEECCCCCCCCEECCCCCCCCCEECCCCCCCHHHHHHH LSYDNSGCFSCYISSACYGVTGLIAKAQFPMTSLVVQCIRESLRNILVSDCKESEGFLVI HHCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEE AQKKLKAAVEAVLVLAVLLFGFKLLSGGVSGLQEWTMFVLKIAAIAYFTIGDGMIVYYDR EHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHH LLTLSTGLADIVYSGGGKKDVCDFDSSEYNELVVTKPLSAEERGCFEAFVKSGHKRDFAE HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCHHH LKKFIDSGVLSCSSLKLGQGGNLPIFSKLELKNLSYMTLWDRLDCRVAFYLGSALGNPTV HHHHHHHCCCCCCCEECCCCCCCCEEEEECCCCCCHHHHHHHHCHHHHHHHHHHCCCCCC AGGGVATVITAGAISALGAGIYMVPVLILAFFFAGQLVIALLVLMYVILMFLIILWIVHL CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FILAIIALTILILFSPIFIPMILFQVTKPFFEGWLKEVMAYSLYPIVLFGFLALVFSVFD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KLFFDDLTFQRVSKLDGVRSYYSYKLANPNQCKEKNADGELRDSSVLACVIQEMSLTQKP HHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCC LLFGIYVTTIASDPSSTSVLWIKLGMMALMLFLFFHFLGILGGLAAELVGNFRADLSRHV HHEEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC SSPQSMAKKLAAISLNTSKTLVEGGKNIGKKLGGKRAGPEGSGDQTVKAKTLVEGGKNIG CCHHHHHHHHHHHCCCCHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHCCHHHH KKLGGKRAGPEGSGDQTVKGAGEGGAGGMGGAG HHCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA