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The map label for this gene is 88607975

Identifier: 88607975

GI number: 88607975

Start: 765772

End: 768291

Strand: Reverse

Name: 88607975

Synonym: NSE_0861

Alternate gene names: NA

Gene position: 768291-765772 (Counterclockwise)

Preceding gene: 88607976

Following gene: 88608816

Centisome position: 89.44

GC content: 42.18

Gene sequence:

>2520_bases
ATGCTGACTAAGGTCAGAATCAGAGCTGGAGGGGTTGCTGTGCCCAACAAAGGTTTTGCACTTGTTTGTTTGTTGCTCCT
TCTTTGTTTGTCTGGGTGTGCCGGAGACTGTATTTCCGGTGCCAGCTCTAATGATGTCAAAAAAGGTACTTTGCGAGTCT
GTCCCAATCCAGGTGATGTAGGTGATAGGAATTGTCTGGAGTATATGGGTGTTGCTGAAGGAGAAGTACCTGATGCTAGG
ACTCACTGGGTAAATGTGGGTATCAACCTAGAAAAGGGTGATATATTTGAATATCAGATTAAAAGGTCTGATGATTATTC
ACTTTGTTATCCTCCCTGTCCTGATGATTGTTTGAACGAAAATGGTGAGAATCTTTGTGATACTCCTAGTTGTAGGTGGG
TGGATCTTGAGTTTCCAGGTGGCAAAGCTGAGGTCGATCTCAATCTTCTTGAAGGTGATGAAGTTCTAATAGGTTTGAGG
CCCGCGCTGGAATCCGGGTTGATTAGTAATGATATTTGTGCGGGTAAAGATGCGAGAATCTACCCGGGAAATTATCAGGA
ATGTATGAAGCATAGAGGGGAACCCTATGGAGGTCTTTTTGCGCCAGGGATTAATCTGGTAGTTGATAAAAAGGGTGCTC
TAGATAAGTTTAAGGTTGTCTACAGCCTGAATGGGGGTATAGACCGATCGATTGGCACAGTCGATTTGTGTAGAGCTGTA
GTTTTTGGAGAAAGTTTAGATCGGTATAGCAAGGAAGTAGAAAATCTAAGTAAAAGAGTTCCTGGAATCGCTCTTCATAG
GTACTGTAAAGCGCTTATAGAGCAAACTGGTCAATTTATTAAGCGCAATGAGGCCTTAGTCGAATTCGAGGGTAAAGATC
TCGTTCTGCGGTGGCTTCATCTCTATTTGAAGGATGATAGTGGACAGTTGTCTTACTTGTGTTACGACGATAAGGATATT
CCTGGGCTCTGTCGTGCCAGTAATGACGATTATTTTTTTAACCGTACAACAGTTCCACTAAATAAATTCTTTAGGGTGTC
TTCAAGATCCTTCAAGTCAATGCAGCTGCAATTTAGTTCACTTGATGAAACGGTTGCGCAAAATGGTATTTTTAAGCTCA
AGGTAAGTAGGAAATGCGATATTCCCGATTTTAAGGGAGTAAAAGTGTACATCTCCGAAGAAGATCCCAACTTTGAACCC
TCAGTTCAGGGTGAAGGGGGTGCATTTTTAGTGCCAGACTCCACCAACATAATAGATAGGAAGGGATCTATGTACGTGGG
AATAGTAGATCAACGAGGAGATGGGAAGGCTGAAAGCCGGGGTTACATATCGCTACATTATGTTCTTAAGCGGCAGAACG
GTATAAAGCTTTTTAGTAAGGCAACGAACAGTGTAAAGAGTAAGATAATAAGGATTTTGTACGGCAAGACAGTCGATGAA
TATGGCAGGTTCAGCGAGGGTGACGATGTTGCTGGCGCGGTAGGGGGTGTCTATAAAGCAGTAGCAGGAAGTACGCTCAC
AATCGCGGTGCAAGCTTCTATCGTACTTTACATCGTTATCTACGGTTTAGCCTTCTTATTTGGCCTTGTTAGGACGCCCC
AGGTTGATCTGGTAATCCTACTTGTGAAGCTTGGCATAATCGCGGTTCTTTTTGGTCCCAATAGTTGGAAATTTTTCAAT
GAGAATTTGTTTCAACTTTTTGTAGAGGGTTCTGGGCAGTTAATTAATTACTTTTCGGGCAACATGAATGGTGTGGATTT
TGCGTTTCTTGATAAAGTACTTGCTCCTTTTAGCACACAAGAGAATTGGCTCAGGATCTTTAGTTTTTTGTTTTCTGGTG
GTTTAGGAATCCTGTATTTCTTGTTGATAATCGTGGGCTTAATACAGATTTTTATGGCCATGCTCAAGATCATCGTTGCG
TACGTCATGTCGCTTGTTATGGTGGCAATACTTCTTTGTCTTGCACCAATCTTTCTCTCCATGATTTTCTTTAAGAGGAC
AAAATCCATTTTTGATAACTGGATAAAAAACTTGGCACAAGTAGCCGTGACCCCCGTTATCACGTTTGCTGCATTTGCAG
TATTGGCAGAGGTTGGATTGGGAATAATTTATGCACTTTTTGATTTCCAGATTTGTCCTAGATGTGTAATTGAACCGGAT
TTTGCGCTATTCAGATTCTGCCTACTTGCTGTGTATTTGCCAACTTCATACGATTTCGGAGGAATAATGGTTGCGCAAAA
TGCAGGTGGGATGCCAGTAGGCATAAGTTTAGTGGTGTCGTTTATCGTGATTAGTAACGCGGTTGTCGCCTTCACTTCAA
GAGCTGCCATTCTCTCTAGTTCAATTTTTGGTGCGATTGCATCTGACGCTACGGTTCCTGCAGAGCAATTCATGGATAGT
ATGAAAGCAATTGTAGGCCAAGATGCTCAAACGCAATATCAAAAAGCGCATATAAGACACACCAAAGAGCTCGATCACGA
AAAAGATGAGCCTGAGAAACCACCAAAACGTAATAGATAG

Upstream 100 bases:

>100_bases
CGTGCGGGACCAGAGGGCTCTGGTGATCAAACCGTTAAAGGCGCTGGAGAAGGTGGTGCAGGCGGAATGGGTGGTGCAGG
TTAAGCAAATAGTATACAAG

Downstream 100 bases:

>100_bases
TGGAGTATTTATGCGTAGAGTAGTTCTGGGCTTATTGCTTCTTTTAAGTGCTTGTGACATGGGGTGTATTTATCCTGGCG
ATGGTGTAAGTGCAAACTTT

Product: VirB6 family type IV secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 839; Mature: 839

Protein sequence:

>839_residues
MLTKVRIRAGGVAVPNKGFALVCLLLLLCLSGCAGDCISGASSNDVKKGTLRVCPNPGDVGDRNCLEYMGVAEGEVPDAR
THWVNVGINLEKGDIFEYQIKRSDDYSLCYPPCPDDCLNENGENLCDTPSCRWVDLEFPGGKAEVDLNLLEGDEVLIGLR
PALESGLISNDICAGKDARIYPGNYQECMKHRGEPYGGLFAPGINLVVDKKGALDKFKVVYSLNGGIDRSIGTVDLCRAV
VFGESLDRYSKEVENLSKRVPGIALHRYCKALIEQTGQFIKRNEALVEFEGKDLVLRWLHLYLKDDSGQLSYLCYDDKDI
PGLCRASNDDYFFNRTTVPLNKFFRVSSRSFKSMQLQFSSLDETVAQNGIFKLKVSRKCDIPDFKGVKVYISEEDPNFEP
SVQGEGGAFLVPDSTNIIDRKGSMYVGIVDQRGDGKAESRGYISLHYVLKRQNGIKLFSKATNSVKSKIIRILYGKTVDE
YGRFSEGDDVAGAVGGVYKAVAGSTLTIAVQASIVLYIVIYGLAFLFGLVRTPQVDLVILLVKLGIIAVLFGPNSWKFFN
ENLFQLFVEGSGQLINYFSGNMNGVDFAFLDKVLAPFSTQENWLRIFSFLFSGGLGILYFLLIIVGLIQIFMAMLKIIVA
YVMSLVMVAILLCLAPIFLSMIFFKRTKSIFDNWIKNLAQVAVTPVITFAAFAVLAEVGLGIIYALFDFQICPRCVIEPD
FALFRFCLLAVYLPTSYDFGGIMVAQNAGGMPVGISLVVSFIVISNAVVAFTSRAAILSSSIFGAIASDATVPAEQFMDS
MKAIVGQDAQTQYQKAHIRHTKELDHEKDEPEKPPKRNR

Sequences:

>Translated_839_residues
MLTKVRIRAGGVAVPNKGFALVCLLLLLCLSGCAGDCISGASSNDVKKGTLRVCPNPGDVGDRNCLEYMGVAEGEVPDAR
THWVNVGINLEKGDIFEYQIKRSDDYSLCYPPCPDDCLNENGENLCDTPSCRWVDLEFPGGKAEVDLNLLEGDEVLIGLR
PALESGLISNDICAGKDARIYPGNYQECMKHRGEPYGGLFAPGINLVVDKKGALDKFKVVYSLNGGIDRSIGTVDLCRAV
VFGESLDRYSKEVENLSKRVPGIALHRYCKALIEQTGQFIKRNEALVEFEGKDLVLRWLHLYLKDDSGQLSYLCYDDKDI
PGLCRASNDDYFFNRTTVPLNKFFRVSSRSFKSMQLQFSSLDETVAQNGIFKLKVSRKCDIPDFKGVKVYISEEDPNFEP
SVQGEGGAFLVPDSTNIIDRKGSMYVGIVDQRGDGKAESRGYISLHYVLKRQNGIKLFSKATNSVKSKIIRILYGKTVDE
YGRFSEGDDVAGAVGGVYKAVAGSTLTIAVQASIVLYIVIYGLAFLFGLVRTPQVDLVILLVKLGIIAVLFGPNSWKFFN
ENLFQLFVEGSGQLINYFSGNMNGVDFAFLDKVLAPFSTQENWLRIFSFLFSGGLGILYFLLIIVGLIQIFMAMLKIIVA
YVMSLVMVAILLCLAPIFLSMIFFKRTKSIFDNWIKNLAQVAVTPVITFAAFAVLAEVGLGIIYALFDFQICPRCVIEPD
FALFRFCLLAVYLPTSYDFGGIMVAQNAGGMPVGISLVVSFIVISNAVVAFTSRAAILSSSIFGAIASDATVPAEQFMDS
MKAIVGQDAQTQYQKAHIRHTKELDHEKDEPEKPPKRNR
>Mature_839_residues
MLTKVRIRAGGVAVPNKGFALVCLLLLLCLSGCAGDCISGASSNDVKKGTLRVCPNPGDVGDRNCLEYMGVAEGEVPDAR
THWVNVGINLEKGDIFEYQIKRSDDYSLCYPPCPDDCLNENGENLCDTPSCRWVDLEFPGGKAEVDLNLLEGDEVLIGLR
PALESGLISNDICAGKDARIYPGNYQECMKHRGEPYGGLFAPGINLVVDKKGALDKFKVVYSLNGGIDRSIGTVDLCRAV
VFGESLDRYSKEVENLSKRVPGIALHRYCKALIEQTGQFIKRNEALVEFEGKDLVLRWLHLYLKDDSGQLSYLCYDDKDI
PGLCRASNDDYFFNRTTVPLNKFFRVSSRSFKSMQLQFSSLDETVAQNGIFKLKVSRKCDIPDFKGVKVYISEEDPNFEP
SVQGEGGAFLVPDSTNIIDRKGSMYVGIVDQRGDGKAESRGYISLHYVLKRQNGIKLFSKATNSVKSKIIRILYGKTVDE
YGRFSEGDDVAGAVGGVYKAVAGSTLTIAVQASIVLYIVIYGLAFLFGLVRTPQVDLVILLVKLGIIAVLFGPNSWKFFN
ENLFQLFVEGSGQLINYFSGNMNGVDFAFLDKVLAPFSTQENWLRIFSFLFSGGLGILYFLLIIVGLIQIFMAMLKIIVA
YVMSLVMVAILLCLAPIFLSMIFFKRTKSIFDNWIKNLAQVAVTPVITFAAFAVLAEVGLGIIYALFDFQICPRCVIEPD
FALFRFCLLAVYLPTSYDFGGIMVAQNAGGMPVGISLVVSFIVISNAVVAFTSRAAILSSSIFGAIASDATVPAEQFMDS
MKAIVGQDAQTQYQKAHIRHTKELDHEKDEPEKPPKRNR

Specific function: Unknown

COG id: COG3704

COG function: function code U; Type IV secretory pathway, VirB6 components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbL/virB6 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007688 [H]

Pfam domain/function: PF04610 TrbL [H]

EC number: NA

Molecular weight: Translated: 92484; Mature: 92484

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTKVRIRAGGVAVPNKGFALVCLLLLLCLSGCAGDCISGASSNDVKKGTLRVCPNPGDV
CCEEEEEEECCEECCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEEECCCCCCC
GDRNCLEYMGVAEGEVPDARTHWVNVGINLEKGDIFEYQIKRSDDYSLCYPPCPDDCLNE
CCHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCCEECCCCCHHHHCC
NGENLCDTPSCRWVDLEFPGGKAEVDLNLLEGDEVLIGLRPALESGLISNDICAGKDARI
CCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCEEEEEECHHHHCCCCCCCCCCCCCCEE
YPGNYQECMKHRGEPYGGLFAPGINLVVDKKGALDKFKVVYSLNGGIDRSIGTVDLCRAV
CCCCHHHHHHHCCCCCCCEECCCCEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHH
VFGESLDRYSKEVENLSKRVPGIALHRYCKALIEQTGQFIKRNEALVEFEGKDLVLRWLH
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH
LYLKDDSGQLSYLCYDDKDIPGLCRASNDDYFFNRTTVPLNKFFRVSSRSFKSMQLQFSS
HHHCCCCCCEEEEEECCCCCCCCEECCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHH
LDETVAQNGIFKLKVSRKCDIPDFKGVKVYISEEDPNFEPSVQGEGGAFLVPDSTNIIDR
HHHHHHHCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCEEC
KGSMYVGIVDQRGDGKAESRGYISLHYVLKRQNGIKLFSKATNSVKSKIIRILYGKTVDE
CCCEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
YGRFSEGDDVAGAVGGVYKAVAGSTLTIAVQASIVLYIVIYGLAFLFGLVRTPQVDLVIL
HCCCCCCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LVKLGIIAVLFGPNSWKFFNENLFQLFVEGSGQLINYFSGNMNGVDFAFLDKVLAPFSTQ
HHHHHHEEEEECCCCCCHHHHHHHEEEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCCC
ENWLRIFSFLFSGGLGILYFLLIIVGLIQIFMAMLKIIVAYVMSLVMVAILLCLAPIFLS
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIFFKRTKSIFDNWIKNLAQVAVTPVITFAAFAVLAEVGLGIIYALFDFQICPRCVIEPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC
FALFRFCLLAVYLPTSYDFGGIMVAQNAGGMPVGISLVVSFIVISNAVVAFTSRAAILSS
HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIFGAIASDATVPAEQFMDSMKAIVGQDAQTQYQKAHIRHTKELDHEKDEPEKPPKRNR
HHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
>Mature Secondary Structure
MLTKVRIRAGGVAVPNKGFALVCLLLLLCLSGCAGDCISGASSNDVKKGTLRVCPNPGDV
CCEEEEEEECCEECCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCCCEEEECCCCCCC
GDRNCLEYMGVAEGEVPDARTHWVNVGINLEKGDIFEYQIKRSDDYSLCYPPCPDDCLNE
CCHHHHHHHCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEECCCCCCEECCCCCHHHHCC
NGENLCDTPSCRWVDLEFPGGKAEVDLNLLEGDEVLIGLRPALESGLISNDICAGKDARI
CCCCCCCCCCCEEEEEECCCCCCEEEEEEECCCEEEEEECHHHHCCCCCCCCCCCCCCEE
YPGNYQECMKHRGEPYGGLFAPGINLVVDKKGALDKFKVVYSLNGGIDRSIGTVDLCRAV
CCCCHHHHHHHCCCCCCCEECCCCEEEEECCCCCCCEEEEEEECCCCCCCCCHHHHHHHH
VFGESLDRYSKEVENLSKRVPGIALHRYCKALIEQTGQFIKRNEALVEFEGKDLVLRWLH
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHH
LYLKDDSGQLSYLCYDDKDIPGLCRASNDDYFFNRTTVPLNKFFRVSSRSFKSMQLQFSS
HHHCCCCCCEEEEEECCCCCCCCEECCCCCEEEEEECCCHHHHHHHHCCCHHHHHHHHHH
LDETVAQNGIFKLKVSRKCDIPDFKGVKVYISEEDPNFEPSVQGEGGAFLVPDSTNIIDR
HHHHHHHCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEEECCCCCCCEEC
KGSMYVGIVDQRGDGKAESRGYISLHYVLKRQNGIKLFSKATNSVKSKIIRILYGKTVDE
CCCEEEEEEECCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
YGRFSEGDDVAGAVGGVYKAVAGSTLTIAVQASIVLYIVIYGLAFLFGLVRTPQVDLVIL
HCCCCCCCCHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LVKLGIIAVLFGPNSWKFFNENLFQLFVEGSGQLINYFSGNMNGVDFAFLDKVLAPFSTQ
HHHHHHEEEEECCCCCCHHHHHHHEEEECCCCCEEEEECCCCCCCHHHHHHHHHCCCCCC
ENWLRIFSFLFSGGLGILYFLLIIVGLIQIFMAMLKIIVAYVMSLVMVAILLCLAPIFLS
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MIFFKRTKSIFDNWIKNLAQVAVTPVITFAAFAVLAEVGLGIIYALFDFQICPRCVIEPD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCCC
FALFRFCLLAVYLPTSYDFGGIMVAQNAGGMPVGISLVVSFIVISNAVVAFTSRAAILSS
HHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
SIFGAIASDATVPAEQFMDSMKAIVGQDAQTQYQKAHIRHTKELDHEKDEPEKPPKRNR
HHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA