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The map label for this gene is secD [H]

Identifier: 88607954

GI number: 88607954

Start: 1428520

End: 1430046

Strand: Reverse

Name: secD [H]

Synonym: APH_1366

Alternate gene names: 88607954

Gene position: 1430046-1428520 (Counterclockwise)

Preceding gene: 88606724

Following gene: 88607049

Centisome position: 97.2

GC content: 42.63

Gene sequence:

>1527_bases
ATGCAATTAGTAGGTAAGGCTGTAGCCACATTCTTGTTGTGTGCCCTCTCTATATACTTTGTGTTGCCCAATTTTGTGGA
CTCAAAGTTTTTTGTGTCTCAAAAGAAAGCCAATCTTGGATTAGATTTGCGGGGAGGCACGTATTTACTATTAGAAGTTG
ATTTTCAAGAATACCTCAAGGAGAGGTTGTATGGCTTGAGCGATGAGCTTCAGGATTTTCTGCAGAGAGAAAAAATACCG
TATGATAAGCTGTACGTGAAAAATCGAACAGTAGTTTTGCATCTTGGCGATCCTGCAGATCTTGCTCGCGTGAAGGCATT
TAACAAAAACGTGGACTTTACTGGCACATCACCGCACCTCCTGATTTCCTTCACAGAATCATATACAAAATCCTTGCTCA
AAGGGGTTATCGACGACTCTACAAATAACATACTACGCAGGCTGGATAAGTCTGGAACGAAAGAAATCACGATAAAGAGC
CAGGGTGAGAATAAAATATCACTACAGGTTCCAGGAGTGCACAATGTTGATAATATAAAGTCACTTATAGGTAAAACAGC
TAAACTTACCTTTCACCTGCTAGAAGATGTTAAAAACCTAGCTGATATTAATCCTTTGACCACACGTCTGTTGTACGATG
CATCAGGGAATGCTTTTCCTGTTATGAAGCGTGTGGAAATTAGTGGCGATTCCCTGGTGGATGCAAGCGCCGGGCTCAAC
AGCGTAGGAAGAGCAGTTGTGTATTTTAAGTTTGATAGTGCTGCCACTAAAAAATTCGCCGACATTACCAAGCAACATGC
AGGCAAACCATTTGCTGCTGTTTTGGATAATGTTGTCCTCACTGCCCCTGTGATACGGGAACCCATTCTCGGGGGAAATG
GAGAGATCACTGGTAGATTTGACTTGGAAACGGCTAAAGAGTTAGCCATTTTACTAAAGTCGGGAGCGCTTCCAGCCCCG
TTGAACATTATTGAAGAAAGAGTTGTGGGTCCGAGTTTAGGAGCAAGATCTATAGAGAAAGGTCGGCTAGCGACAATATC
GTCTATAGCTGTCGTTTCTATTTTCGTTATTATGTCTTACGGAGTACTAGGTCTTTTTGCTGTTATAGGTCTAGTTTTCA
ATATAGTGTTCGTCCTGCTGGCTATGACGTTTCTAGGCGCTACTCTAACCTTGCCTGGTATTGCAGGAATTACTCTAACG
GTGGGTATGTCCATTGATGCTAATGTTCTCATTTTTGAGAGAATTAGGGAAGAAATGCGTGCTTCTGGTAAGCTCAGGTT
AGCTGTGGAGCGTGGCTTTAAGAATGCCATGTCGACTATTTTTGACTCTAACATGACGACACTGATAGTGGCGGTTATCA
TGCTGGTATCTGGGAGTACTTCAGTTCAGGGGTTTGCTGCGACCTTAGGCATTGGTATACTATGCTCTATGCTTTCGGCA
GTAGTCTTAACTAAGGTTTTGATAGACGTTGGTGTGCGTATGGGCTTGGTAAGCAATTTAGGGTTAAGAATGAACAGTGG
TTTTTAG

Upstream 100 bases:

>100_bases
TGCATCAAACTCAGAAGTAATTTTAAAATGTCGCATCAAATCACTATCCCGATTGTCCTGGATCGAATACAATGTACCTT
ATATTGTATAGTAGTGACAT

Downstream 100 bases:

>100_bases
AGGTTGCCATTGATGAGTAGTGCTGAAGAAAAGGGAGAAAAAATATTATCGTGTAACGGGAATAATAGTGATGATAATTT
CTTCGGGCATCCCAAAGTAT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 508; Mature: 508

Protein sequence:

>508_residues
MQLVGKAVATFLLCALSIYFVLPNFVDSKFFVSQKKANLGLDLRGGTYLLLEVDFQEYLKERLYGLSDELQDFLQREKIP
YDKLYVKNRTVVLHLGDPADLARVKAFNKNVDFTGTSPHLLISFTESYTKSLLKGVIDDSTNNILRRLDKSGTKEITIKS
QGENKISLQVPGVHNVDNIKSLIGKTAKLTFHLLEDVKNLADINPLTTRLLYDASGNAFPVMKRVEISGDSLVDASAGLN
SVGRAVVYFKFDSAATKKFADITKQHAGKPFAAVLDNVVLTAPVIREPILGGNGEITGRFDLETAKELAILLKSGALPAP
LNIIEERVVGPSLGARSIEKGRLATISSIAVVSIFVIMSYGVLGLFAVIGLVFNIVFVLLAMTFLGATLTLPGIAGITLT
VGMSIDANVLIFERIREEMRASGKLRLAVERGFKNAMSTIFDSNMTTLIVAVIMLVSGSTSVQGFAATLGIGILCSMLSA
VVLTKVLIDVGVRMGLVSNLGLRMNSGF

Sequences:

>Translated_508_residues
MQLVGKAVATFLLCALSIYFVLPNFVDSKFFVSQKKANLGLDLRGGTYLLLEVDFQEYLKERLYGLSDELQDFLQREKIP
YDKLYVKNRTVVLHLGDPADLARVKAFNKNVDFTGTSPHLLISFTESYTKSLLKGVIDDSTNNILRRLDKSGTKEITIKS
QGENKISLQVPGVHNVDNIKSLIGKTAKLTFHLLEDVKNLADINPLTTRLLYDASGNAFPVMKRVEISGDSLVDASAGLN
SVGRAVVYFKFDSAATKKFADITKQHAGKPFAAVLDNVVLTAPVIREPILGGNGEITGRFDLETAKELAILLKSGALPAP
LNIIEERVVGPSLGARSIEKGRLATISSIAVVSIFVIMSYGVLGLFAVIGLVFNIVFVLLAMTFLGATLTLPGIAGITLT
VGMSIDANVLIFERIREEMRASGKLRLAVERGFKNAMSTIFDSNMTTLIVAVIMLVSGSTSVQGFAATLGIGILCSMLSA
VVLTKVLIDVGVRMGLVSNLGLRMNSGF
>Mature_508_residues
MQLVGKAVATFLLCALSIYFVLPNFVDSKFFVSQKKANLGLDLRGGTYLLLEVDFQEYLKERLYGLSDELQDFLQREKIP
YDKLYVKNRTVVLHLGDPADLARVKAFNKNVDFTGTSPHLLISFTESYTKSLLKGVIDDSTNNILRRLDKSGTKEITIKS
QGENKISLQVPGVHNVDNIKSLIGKTAKLTFHLLEDVKNLADINPLTTRLLYDASGNAFPVMKRVEISGDSLVDASAGLN
SVGRAVVYFKFDSAATKKFADITKQHAGKPFAAVLDNVVLTAPVIREPILGGNGEITGRFDLETAKELAILLKSGALPAP
LNIIEERVVGPSLGARSIEKGRLATISSIAVVSIFVIMSYGVLGLFAVIGLVFNIVFVLLAMTFLGATLTLPGIAGITLT
VGMSIDANVLIFERIREEMRASGKLRLAVERGFKNAMSTIFDSNMTTLIVAVIMLVSGSTSVQGFAATLGIGILCSMLSA
VVLTKVLIDVGVRMGLVSNLGLRMNSGF

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=517, Percent_Identity=31.7214700193424, Blast_Score=240, Evalue=2e-64,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 54915; Mature: 54915

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLVGKAVATFLLCALSIYFVLPNFVDSKFFVSQKKANLGLDLRGGTYLLLEVDFQEYLK
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEECCCEEEEEEECHHHHHH
ERLYGLSDELQDFLQREKIPYDKLYVKNRTVVLHLGDPADLARVKAFNKNVDFTGTSPHL
HHHCCCCHHHHHHHHHHCCCHHHEEEECCEEEEECCCCHHHHHHHHHCCCCCCCCCCCEE
LISFTESYTKSLLKGVIDDSTNNILRRLDKSGTKEITIKSQGENKISLQVPGVHNVDNIK
EEEEHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCHHHHH
SLIGKTAKLTFHLLEDVKNLADINPLTTRLLYDASGNAFPVMKRVEISGDSLVDASAGLN
HHHCCHHHHHHHHHHHHHHHHCCCHHHHHEEEECCCCEECEEEEEEECCCCCEECCCCHH
SVGRAVVYFKFDSAATKKFADITKQHAGKPFAAVLDNVVLTAPVIREPILGGNGEITGRF
CCCCEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHCCHHHHCHHHHCCCCCCCCCEEEEE
DLETAKELAILLKSGALPAPLNIIEERVVGPSLGARSIEKGRLATISSIAVVSIFVIMSY
CHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
GVLGLFAVIGLVFNIVFVLLAMTFLGATLTLPGIAGITLTVGMSIDANVLIFERIREEMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
ASGKLRLAVERGFKNAMSTIFDSNMTTLIVAVIMLVSGSTSVQGFAATLGIGILCSMLSA
CCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
VVLTKVLIDVGVRMGLVSNLGLRMNSGF
HHHHHHHHHHHHHHHHHHHCCCEECCCC
>Mature Secondary Structure
MQLVGKAVATFLLCALSIYFVLPNFVDSKFFVSQKKANLGLDLRGGTYLLLEVDFQEYLK
CCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEECCCEEEEEEECHHHHHH
ERLYGLSDELQDFLQREKIPYDKLYVKNRTVVLHLGDPADLARVKAFNKNVDFTGTSPHL
HHHCCCCHHHHHHHHHHCCCHHHEEEECCEEEEECCCCHHHHHHHHHCCCCCCCCCCCEE
LISFTESYTKSLLKGVIDDSTNNILRRLDKSGTKEITIKSQGENKISLQVPGVHNVDNIK
EEEEHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEEECCCCEEEEEECCCCCHHHHH
SLIGKTAKLTFHLLEDVKNLADINPLTTRLLYDASGNAFPVMKRVEISGDSLVDASAGLN
HHHCCHHHHHHHHHHHHHHHHCCCHHHHHEEEECCCCEECEEEEEEECCCCCEECCCCHH
SVGRAVVYFKFDSAATKKFADITKQHAGKPFAAVLDNVVLTAPVIREPILGGNGEITGRF
CCCCEEEEEEECCHHHHHHHHHHHHHCCCCHHHHHCCHHHHCHHHHCCCCCCCCCEEEEE
DLETAKELAILLKSGALPAPLNIIEERVVGPSLGARSIEKGRLATISSIAVVSIFVIMSY
CHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
GVLGLFAVIGLVFNIVFVLLAMTFLGATLTLPGIAGITLTVGMSIDANVLIFERIREEMR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
ASGKLRLAVERGFKNAMSTIFDSNMTTLIVAVIMLVSGSTSVQGFAATLGIGILCSMLSA
CCCCEEEEHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH
VVLTKVLIDVGVRMGLVSNLGLRMNSGF
HHHHHHHHHHHHHHHHHHHCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA