Click here to switch to the map view.

The map label for this gene is msp4 [H]

Identifier: 88607879

GI number: 88607879

Start: 1309865

End: 1310713

Strand: Reverse

Name: msp4 [H]

Synonym: APH_1240

Alternate gene names: 88607879

Gene position: 1310713-1309865 (Counterclockwise)

Preceding gene: 88607512

Following gene: 88606703

Centisome position: 89.09

GC content: 41.81

Gene sequence:

>849_bases
ATGAATTACAGAGAATTGCTTGTAGGGAGCCTATCTGCGGCCGCAGTATGTGCCTGCTCCCTTTTAATTAGTGGATCCTC
ATTTGCGTATTCAGGCAATAATGATGCGTCTGATGTTAGCGGTGTTATGAACGGCAGCTTTTACGTAAGTGGTAGCTACA
GTCCGTCATTTCCTTCTATATCTTCATTTGCTATTAGTGAGTCTGACAGGGGAGGATCTTACGTAAAAGGTTATAACAAG
AATTTGAGCACGTTGAATGTTTCAGATCCTGCCAGCTTCACGCAACATGATCCCTCATTCAAGTTCGCTAAGAGTTTACT
AACATCTTTTGACGGTGCAACTGGCTATGCTATTGGCGGAGCTAGAGTGGAAGTTGAAGTTGGATATAAAAAGTTTGAAA
CGCTCGCTGAAAGTGACTACAAGCATGTAGAATCACATAATTTTGTTGCTGTGGGTCGTGACGCGACATTAACTCCAGAC
AACTTCTTTGTAATGAAAATAGACAGCGTCAAAGATATATCTGTAATGCTTAACGCTTGTTACGACGTTATGCATACTGA
CTTGCCTGTATCTCCTTACATGTGTGCTGGGTTAGGGGCGAGCTTTATTAATATCGCCGATCACGTTACAAGTAAGTTGG
CTTATAGAGGAAAGGTAGGCGTAAGTTACAAGCTTACTCCTGAAATATCTTTAATAGCTGGAGGTTTTTACCACGGAATT
TTCGATGAACAGTATGCAGGTATTCCCGCTAGTAACCGTGTAAACATAGCAGGTGGTGCTGCAGCCAAGGTAAAGGCAAA
TATAGCTAGTTACGGCTTCAACATAGGAGCAAGATTTGCTTTCAATTAA

Upstream 100 bases:

>100_bases
GATACTATAAATTTTAGGAATTTAATCCATGAGTCTTCCACACCATCGGTTTATATGTTAAACTCCAGCGTATTTTTTAT
GATTAGTCAAAAGGATTACT

Downstream 100 bases:

>100_bases
CTGATGGTGAACATGTGGTAAAGAACTGGCAAAGCTTTACCACATGTTAGACTAAATAAGCGCACTACAGAGCCTTAAGA
GATGTCATAATTGTGCTGAC

Product: major surface protein 4

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 282

Protein sequence:

>282_residues
MNYRELLVGSLSAAAVCACSLLISGSSFAYSGNNDASDVSGVMNGSFYVSGSYSPSFPSISSFAISESDRGGSYVKGYNK
NLSTLNVSDPASFTQHDPSFKFAKSLLTSFDGATGYAIGGARVEVEVGYKKFETLAESDYKHVESHNFVAVGRDATLTPD
NFFVMKIDSVKDISVMLNACYDVMHTDLPVSPYMCAGLGASFINIADHVTSKLAYRGKVGVSYKLTPEISLIAGGFYHGI
FDEQYAGIPASNRVNIAGGAAAKVKANIASYGFNIGARFAFN

Sequences:

>Translated_282_residues
MNYRELLVGSLSAAAVCACSLLISGSSFAYSGNNDASDVSGVMNGSFYVSGSYSPSFPSISSFAISESDRGGSYVKGYNK
NLSTLNVSDPASFTQHDPSFKFAKSLLTSFDGATGYAIGGARVEVEVGYKKFETLAESDYKHVESHNFVAVGRDATLTPD
NFFVMKIDSVKDISVMLNACYDVMHTDLPVSPYMCAGLGASFINIADHVTSKLAYRGKVGVSYKLTPEISLIAGGFYHGI
FDEQYAGIPASNRVNIAGGAAAKVKANIASYGFNIGARFAFN
>Mature_282_residues
MNYRELLVGSLSAAAVCACSLLISGSSFAYSGNNDASDVSGVMNGSFYVSGSYSPSFPSISSFAISESDRGGSYVKGYNK
NLSTLNVSDPASFTQHDPSFKFAKSLLTSFDGATGYAIGGARVEVEVGYKKFETLAESDYKHVESHNFVAVGRDATLTPD
NFFVMKIDSVKDISVMLNACYDVMHTDLPVSPYMCAGLGASFINIADHVTSKLAYRGKVGVSYKLTPEISLIAGGFYHGI
FDEQYAGIPASNRVNIAGGAAAKVKANIASYGFNIGARFAFN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the surface antigen msp4 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR002566 [H]

Pfam domain/function: PF01617 Surface_Ag_2 [H]

EC number: NA

Molecular weight: Translated: 29911; Mature: 29911

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYRELLVGSLSAAAVCACSLLISGSSFAYSGNNDASDVSGVMNGSFYVSGSYSPSFPSI
CCHHHHHHHCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCEEEEECCCCCCCCCC
SSFAISESDRGGSYVKGYNKNLSTLNVSDPASFTQHDPSFKFAKSLLTSFDGATGYAIGG
CEEEECCCCCCCCEEECCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECC
ARVEVEVGYKKFETLAESDYKHVESHNFVAVGRDATLTPDNFFVMKIDSVKDISVMLNAC
EEEEEEECHHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCEEEEEECCCCHHHHHHHHH
YDVMHTDLPVSPYMCAGLGASFINIADHVTSKLAYRGKVGVSYKLTPEISLIAGGFYHGI
HHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCHHHCC
FDEQYAGIPASNRVNIAGGAAAKVKANIASYGFNIGARFAFN
CCHHHCCCCCCCEEEECCCCCEEEEEEHHHCCCCCCEEEECC
>Mature Secondary Structure
MNYRELLVGSLSAAAVCACSLLISGSSFAYSGNNDASDVSGVMNGSFYVSGSYSPSFPSI
CCHHHHHHHCHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHCCCEEEEECCCCCCCCCC
SSFAISESDRGGSYVKGYNKNLSTLNVSDPASFTQHDPSFKFAKSLLTSFDGATGYAIGG
CEEEECCCCCCCCEEECCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEECC
ARVEVEVGYKKFETLAESDYKHVESHNFVAVGRDATLTPDNFFVMKIDSVKDISVMLNAC
EEEEEEECHHHHHHHHHHHHHHHCCCCEEEECCCCEECCCCEEEEEECCCCHHHHHHHHH
YDVMHTDLPVSPYMCAGLGASFINIADHVTSKLAYRGKVGVSYKLTPEISLIAGGFYHGI
HHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCHHHCC
FDEQYAGIPASNRVNIAGGAAAKVKANIASYGFNIGARFAFN
CCHHHCCCCCCCEEEECCCCCEEEEEEHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8294020 [H]