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The map label for this gene is ygaF [H]

Identifier: 88607185

GI number: 88607185

Start: 838979

End: 839443

Strand: Reverse

Name: ygaF [H]

Synonym: APH_0795

Alternate gene names: 88607185

Gene position: 839443-838979 (Counterclockwise)

Preceding gene: 88607443

Following gene: 88607769

Centisome position: 57.06

GC content: 39.14

Gene sequence:

>465_bases
ATGGTAGTTAGAGAAGGGGATAAGGCGCCGGGGTTCAAAGAGGAAGAGGGAGTAGTGTTTCCTATTTTGGCATCTTATTA
TGGGAATAAGAACGTAGTGCTATATTTTTATCCGAAAGATGATACTCCAGGATGTACCAAAGAGGCTGAAGGCTTTCGTG
ATGCTAATGACAAGTTTGCAAATCTAAATACCGCTGTTGTAGGGGTGTCTAGGGATAGCATAACCTCACACGAAAATTTC
AAAAAAAAGTACCAGTTGCCTTTTGAGCTTATTGCTGATGAAGAAGCTATTTTGGCAAAAGCATATGGCGTATGGGTAGA
AAAGAGCATGTTTGGGAAGTGTTATATGGGCATTGAACGATCAACTTTCTTGATAGATAAATGCGGTATTCTCAAGAGGA
TATGGAGGAATGTTAAAGTACATGATCATGTTGATACTGTATTAAAAGCGGTAAATGAGCTTTAG

Upstream 100 bases:

>100_bases
TTTGCTGAAAATCTGTATTGCCAAAATTTCTGGTGATTAGTTTGTGAATGTTTCAGAGTACGTGTATCATCGGCTTGTGA
ATTATAGTTGAGAGGTAATT

Downstream 100 bases:

>100_bases
TAGTTTCTAGAAAAGCAATTATACTTTATGGTTTTCAAAAAGAAGCCCGTAAAAATCAGGCTATATTACAGCGATAGCGC
ACTGAATAAGGGTGAAAAGG

Product: anti-oxidant AhpCTSA family protein

Products: NA

Alternate protein names: Bacterioferritin comigratory protein; Thioredoxin reductase [H]

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MVVREGDKAPGFKEEEGVVFPILASYYGNKNVVLYFYPKDDTPGCTKEAEGFRDANDKFANLNTAVVGVSRDSITSHENF
KKKYQLPFELIADEEAILAKAYGVWVEKSMFGKCYMGIERSTFLIDKCGILKRIWRNVKVHDHVDTVLKAVNEL

Sequences:

>Translated_154_residues
MVVREGDKAPGFKEEEGVVFPILASYYGNKNVVLYFYPKDDTPGCTKEAEGFRDANDKFANLNTAVVGVSRDSITSHENF
KKKYQLPFELIADEEAILAKAYGVWVEKSMFGKCYMGIERSTFLIDKCGILKRIWRNVKVHDHVDTVLKAVNEL
>Mature_154_residues
MVVREGDKAPGFKEEEGVVFPILASYYGNKNVVLYFYPKDDTPGCTKEAEGFRDANDKFANLNTAVVGVSRDSITSHENF
KKKYQLPFELIADEEAILAKAYGVWVEKSMFGKCYMGIERSTFLIDKCGILKRIWRNVKVHDHVDTVLKAVNEL

Specific function: Unknown

COG id: COG1225

COG function: function code O; Peroxiredoxin

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 thioredoxin domain [H]

Homologues:

Organism=Escherichia coli, GI1788825, Length=151, Percent_Identity=36.4238410596026, Blast_Score=102, Evalue=1e-23,
Organism=Saccharomyces cerevisiae, GI6322180, Length=66, Percent_Identity=43.9393939393939, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: 920 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000866
- InterPro:   IPR017936
- InterPro:   IPR012336
- InterPro:   IPR012335 [H]

Pfam domain/function: PF00578 AhpC-TSA [H]

EC number: =1.11.1.15 [H]

Molecular weight: Translated: 17477; Mature: 17477

Theoretical pI: Translated: 6.78; Mature: 6.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVVREGDKAPGFKEEEGVVFPILASYYGNKNVVLYFYPKDDTPGCTKEAEGFRDANDKFA
CCCCCCCCCCCCCCCCCEEEEEHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
NLNTAVVGVSRDSITSHENFKKKYQLPFELIADEEAILAKAYGVWVEKSMFGKCYMGIER
CCCEEEEECCCCCCCCCHHHHHHHCCCHHEECCCHHHHHHHHHHHHHHHHCCHHHCCCCC
STFLIDKCGILKRIWRNVKVHDHVDTVLKAVNEL
CEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MVVREGDKAPGFKEEEGVVFPILASYYGNKNVVLYFYPKDDTPGCTKEAEGFRDANDKFA
CCCCCCCCCCCCCCCCCEEEEEHHHHCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCC
NLNTAVVGVSRDSITSHENFKKKYQLPFELIADEEAILAKAYGVWVEKSMFGKCYMGIER
CCCEEEEECCCCCCCCCHHHHHHHCCCHHEECCCHHHHHHHHHHHHHHHHCCHHHCCCCC
STFLIDKCGILKRIWRNVKVHDHVDTVLKAVNEL
CEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]