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The map label for this gene is recO

Identifier: 88607051

GI number: 88607051

Start: 781424

End: 782161

Strand: Direct

Name: recO

Synonym: APH_0736

Alternate gene names: 88607051

Gene position: 781424-782161 (Clockwise)

Preceding gene: 88607240

Following gene: 88607757

Centisome position: 53.11

GC content: 39.97

Gene sequence:

>738_bases
ATGCAATGGCAAGACCATGGAATGATCGTAAGCATGACGCCTTATGGGGATACTCGAAGTATATTGTCTGTATTTACGCG
TAATCACGGAATTTGCAATGCCATGATCAGACTAAACAAAAAGAAGCAGTCTCTGCAGATTGGAGATAGAGTGTGCGTAA
CGTGGCGTGCGAGATTAGCTAATAACCTTGGGTATTTTAACTCCTGTGAAATTATTTCATCAGCTTTTTATGCGTATTTT
CAAGATCATTCAAAGTTGCTGTGTCTATCCTCTGTTACATCCACAATATACAAGTCCGTCCCCACAAATGATGCACATCC
TATACTATATGACTATCTTATAGAGTTTGCTGAAGCTGCAGAATGTGGAGGCCATTGGTACAACGAGTACTTAAAGCTTG
AACTTGAAATTTTATCCCAGCTGGGCTTCGCCTTAGATCTCTCAAGATGCGCTGTTTACCATTGCGAAGATAATCTATTG
TACATATCTCCTAAAACAGGTCGCGCAATATCTGAAAGAGCTGGCGTATCATATCGGCACTTGTTATTCCCTCTACCACA
AATATTACGCGATCTTCATAATGGAACTCACACCGAACAGTGTTCACGAAAAGAGTTTTTGCTCTGCTTACAAATCCTAG
GATATTTTCTCCATAGACATTTACTATCAGATGATTCAAAATTCCTAGAGCAGCGCAAAGAAATGACAGCCCTTATATAT
GAGGAAGAGGCGTTTTAA

Upstream 100 bases:

>100_bases
GAAGTAAATACACTACAAATTTACGGTTCTACATTATTGCCCTTGACAGCTCTTCCCCACTTATCAAAACTTAAGGCTCG
TTCTATAGCGCTGATTCACT

Downstream 100 bases:

>100_bases
AAATATTCACTATTGCATGGTAGATGTAGTTAGGATATGCCTTGAATTTTCTATGTTACTTGAGAGGTGATTATGCATAA
ACCTGGTGGTGGCGGTGCCG

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MQWQDHGMIVSMTPYGDTRSILSVFTRNHGICNAMIRLNKKKQSLQIGDRVCVTWRARLANNLGYFNSCEIISSAFYAYF
QDHSKLLCLSSVTSTIYKSVPTNDAHPILYDYLIEFAEAAECGGHWYNEYLKLELEILSQLGFALDLSRCAVYHCEDNLL
YISPKTGRAISERAGVSYRHLLFPLPQILRDLHNGTHTEQCSRKEFLLCLQILGYFLHRHLLSDDSKFLEQRKEMTALIY
EEEAF

Sequences:

>Translated_245_residues
MQWQDHGMIVSMTPYGDTRSILSVFTRNHGICNAMIRLNKKKQSLQIGDRVCVTWRARLANNLGYFNSCEIISSAFYAYF
QDHSKLLCLSSVTSTIYKSVPTNDAHPILYDYLIEFAEAAECGGHWYNEYLKLELEILSQLGFALDLSRCAVYHCEDNLL
YISPKTGRAISERAGVSYRHLLFPLPQILRDLHNGTHTEQCSRKEFLLCLQILGYFLHRHLLSDDSKFLEQRKEMTALIY
EEEAF
>Mature_245_residues
MQWQDHGMIVSMTPYGDTRSILSVFTRNHGICNAMIRLNKKKQSLQIGDRVCVTWRARLANNLGYFNSCEIISSAFYAYF
QDHSKLLCLSSVTSTIYKSVPTNDAHPILYDYLIEFAEAAECGGHWYNEYLKLELEILSQLGFALDLSRCAVYHCEDNLL
YISPKTGRAISERAGVSYRHLLFPLPQILRDLHNGTHTEQCSRKEFLLCLQILGYFLHRHLLSDDSKFLEQRKEMTALIY
EEEAF

Specific function: Involved in DNA repair and recF pathway recombination

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RECO_ANAPZ (Q2GJY5)

Other databases:

- EMBL:   CP000235
- RefSeq:   YP_505316.1
- ProteinModelPortal:   Q2GJY5
- STRING:   Q2GJY5
- GeneID:   3930129
- GenomeReviews:   CP000235_GR
- KEGG:   aph:APH_0736
- NMPDR:   fig|212042.5.peg.717
- TIGR:   APH_0736
- eggNOG:   COG1381
- HOGENOM:   HBG474229
- OMA:   PERDPHP
- ProtClustDB:   PRK00085
- BioCyc:   APHA212042:APH_0736-MONOMER
- HAMAP:   MF_00201
- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- TIGRFAMs:   TIGR00613

Pfam domain/function: PF02565 RecO; PF11967 RecO_N; SSF57863 ArfGAP; SSF50249 Nucleic_acid_OB

EC number: NA

Molecular weight: Translated: 28321; Mature: 28321

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQWQDHGMIVSMTPYGDTRSILSVFTRNHGICNAMIRLNKKKQSLQIGDRVCVTWRARLA
CCCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHCCCHHHHHHHHHHH
NNLGYFNSCEIISSAFYAYFQDHSKLLCLSSVTSTIYKSVPTNDAHPILYDYLIEFAEAA
HCCCCCCHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
ECGGHWYNEYLKLELEILSQLGFALDLSRCAVYHCEDNLLYISPKTGRAISERAGVSYRH
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEECCCCCCHHHHHCCCCHHH
LLFPLPQILRDLHNGTHTEQCSRKEFLLCLQILGYFLHRHLLSDDSKFLEQRKEMTALIY
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
EEEAF
CCCCC
>Mature Secondary Structure
MQWQDHGMIVSMTPYGDTRSILSVFTRNHGICNAMIRLNKKKQSLQIGDRVCVTWRARLA
CCCCCCCEEEEECCCCCHHHHHHHHHHCCCHHHHHHHHCCHHHHHHCCCHHHHHHHHHHH
NNLGYFNSCEIISSAFYAYFQDHSKLLCLSSVTSTIYKSVPTNDAHPILYDYLIEFAEAA
HCCCCCCHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
ECGGHWYNEYLKLELEILSQLGFALDLSRCAVYHCEDNLLYISPKTGRAISERAGVSYRH
HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEECCCEEEECCCCCCHHHHHCCCCHHH
LLFPLPQILRDLHNGTHTEQCSRKEFLLCLQILGYFLHRHLLSDDSKFLEQRKEMTALIY
HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
EEEAF
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA