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The map label for this gene is hup [C]

Identifier: 88606926

GI number: 88606926

Start: 826141

End: 826416

Strand: Direct

Name: hup [C]

Synonym: APH_0784

Alternate gene names: 88606926

Gene position: 826141-826416 (Clockwise)

Preceding gene: 88607018

Following gene: 88607615

Centisome position: 56.15

GC content: 41.67

Gene sequence:

>276_bases
ATGAGCAAGGAAATCATAGTAAGGGCGTTGATGTCGGGTTTAGGCTTTACAAAGAAAGATTCTAGTAGCGCTTATGATGT
GGTAATGTCTGCAATTAAGACAGCCCTAGAAACCAATCATTCAATTCGCCTGCACAACGTTGGTACGCTGCATGTTATTC
AGTGCGCAGAGAAGAAGTACCACAATCCAAAAACTGGTCACTTAGAAACATTACCTCCAAAAAGACGTGTACGATTCCGT
TCGAGTAGGAAGTTGTTAGATACGGTAAATGTGTAG

Upstream 100 bases:

>100_bases
TTAATAATACGTTAGTTAATGGCTACGAATTTAGTTGACTATAGCAACCAACCTAATATCCTAGGTCCGGTTAACTTATG
TCGAGTCAGGAGTTTTACTT

Downstream 100 bases:

>100_bases
AAGCACTTTGTATGCGGGTAGGAACCTAGCATCTTTTTGATCGTGTATTTCTTGTTAGAGTTGTTGCTTCGTAGACAAAG
TGGATTAGTATTTGTATCGA

Product: DNA-binding protein HU

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 91; Mature: 90

Protein sequence:

>91_residues
MSKEIIVRALMSGLGFTKKDSSSAYDVVMSAIKTALETNHSIRLHNVGTLHVIQCAEKKYHNPKTGHLETLPPKRRVRFR
SSRKLLDTVNV

Sequences:

>Translated_91_residues
MSKEIIVRALMSGLGFTKKDSSSAYDVVMSAIKTALETNHSIRLHNVGTLHVIQCAEKKYHNPKTGHLETLPPKRRVRFR
SSRKLLDTVNV
>Mature_90_residues
SKEIIVRALMSGLGFTKKDSSSAYDVVMSAIKTALETNHSIRLHNVGTLHVIQCAEKKYHNPKTGHLETLPPKRRVRFRS
SRKLLDTVNV

Specific function: Histone-Like DNA-Binding Protein Which Is Capable Of Wrapping DNA To Stabilize It, And Thus To Prevent Its Denaturation Under Extreme Environmental Conditions. [C]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 860 Molecules/Cell In: Growth-Phase, Minimal Media (Based on E. coli). 2040 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 10258; Mature: 10127

Theoretical pI: Translated: 10.92; Mature: 10.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKEIIVRALMSGLGFTKKDSSSAYDVVMSAIKTALETNHSIRLHNVGTLHVIQCAEKKY
CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHC
HNPKTGHLETLPPKRRVRFRSSRKLLDTVNV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SKEIIVRALMSGLGFTKKDSSSAYDVVMSAIKTALETNHSIRLHNVGTLHVIQCAEKKY
CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHC
HNPKTGHLETLPPKRRVRFRSSRKLLDTVNV
CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA