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The map label for this gene is yjcF [C]

Identifier: 88606892

GI number: 88606892

Start: 1237808

End: 1239502

Strand: Reverse

Name: yjcF [C]

Synonym: APH_1170

Alternate gene names: 88606892

Gene position: 1239502-1237808 (Counterclockwise)

Preceding gene: 88607098

Following gene: 88607821

Centisome position: 84.25

GC content: 41.24

Gene sequence:

>1695_bases
ATGAAGAAAACTCCGTACACCCGTCAGGATTTTCAAGATTTCATTACGAAATGTGATGCCAAAGGGATTGCACCTAATTT
CTCTAAGGAATTTGGAAACAATTTCTACGGGGCGGATTTTAGTGAATTGGACATGAGAGGATCGATCTTTGAAGATGTGA
ATCTCATGCAGGCTAGCTTTAGGCACAGTAACATTTCGAATACCGTCTTTACCAACTCGGATATGCGTGGCACGGATTTC
TCTAATACGGACCTCAATAAATCACGCTTTGAAAATGTGGATTTGAAGTTTGCCAATTTAGCGCTAGCTGACTTAAGTGG
AGTTAAGATTACGTCTTCAGATATAGGATACTCCTCATTCATAGGCTCTGATATGCAAATGGCATCTTTGGATAAGGTGA
CGGGGTATGGTGCGACCTTTTCTAATGCGGAGCTTACGTTGGTTTCTATAACGGAGTCCACACTACGCAAAGCAAACTTC
CAGGATGCAGAAGCGTCTAACGTTGTGATTCAAAATAGTGACTTAACAGAGGTGAGCTTTTTTGGTGCAAATTTACGGAG
TGCAAGAATACAGCAGTCCTTATTGCAGCACTCTATGATGTACGCTGTTAACCTGGATTTTGCAGATTTAACAGGAAGTG
ATCTCAGCTTTTCCAACCTTGAGATGGCCAGCATCCGTTCCGCAAGCTTATATAAAGCCAATCTCAAGAATGTTAACATG
TATTCTGCTGATGTTTATTACACTGATCTACGTGATGCAGATCTCAGCAGGGCTACGCTGGAAAACACGTCTTTGGTTGG
TGTTAACCTCAAAGATGCGATATTGCAACATAGTGTTCTAAACGGTGCATCTATAGAAGAATCTATACTACAATCCTCAG
ATCTTCGTGGAGTATCTTTAGATTCAGGACGTGTTTCTCACAGCGAAATGAACTTAGCCATACTTAACAATGCGGTCATT
AGAAATTCTAACATAACGAAATCAAATATGCGTTCCGCATCACTACATGGTGCGATGTTAGAGGGTGTGAACGTGTCAGA
GGTGGATTTTACCAGTGCTAATATGAAAGGGGCGAAGGCGTCAAAATCTGTTTACAGCGGTATTATAGCTCGCAATACCA
GATGGGCATATGCGCAGCTCAATGACCTGATCATATACAATAGTCAGTTTGATAAAGCTAGGTTTTACAACAGTAATTTG
AACAAGGTGAATTTCTTTCGCAGCGACATGGCTGGCATTCTTTTCTCAAAGTCAGCATTTATAGGGTCGAGTATACACGG
CAACACGATGAGTGCGGCTAAGTTCCGGGATTGTACATTCAAGAATACTCTTGTGGTCGATAATGGAATCAGTGCGCCTG
TAGGGGCTATAGGTTCAATAGATGCTTTAGAGCAGTTATTCTCAAGTGAGCTAGTCTTTGACGTGAATTATTCCTACTTT
GACTTTAGTGGTATGAGTTTACACGACATAGACTTTTCGAACGCTGTATTAGCTGGAGTTAAATTCAATGATGCACACTT
GTCAAAAGTGAATTTTACGGGTGCAAATCTTTCTTTTACCGACTTTACCGATGCAAGGTTAGAGGACGTAAATTTTGCGA
ATGCAAATCTTTTAGGAGCAAATATTGCTGGACACGATGCTTTTGAAGAGAAGGATGAAGTCCCTGGAGAACGCGACAGT
CTTCTTTCTAGATGA

Upstream 100 bases:

>100_bases
AGTCTGCATTGTTTTGTCGGGTATTTTTATATACACCAATGCATGTGCCTCTACGGCAGAGGAAGATCCGAGGAGTTCTT
TCATTAAAGACGTAGAGGGG

Downstream 100 bases:

>100_bases
CGAACAAATCATACCAAGGCTAGTTTTGTTAGCTGCACTGTGGAGTAGATATCGCACTTCGGAATTCGGAGTTAAATACA
AAGCGCATGCCGTATTTGGA

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 564; Mature: 564

Protein sequence:

>564_residues
MKKTPYTRQDFQDFITKCDAKGIAPNFSKEFGNNFYGADFSELDMRGSIFEDVNLMQASFRHSNISNTVFTNSDMRGTDF
SNTDLNKSRFENVDLKFANLALADLSGVKITSSDIGYSSFIGSDMQMASLDKVTGYGATFSNAELTLVSITESTLRKANF
QDAEASNVVIQNSDLTEVSFFGANLRSARIQQSLLQHSMMYAVNLDFADLTGSDLSFSNLEMASIRSASLYKANLKNVNM
YSADVYYTDLRDADLSRATLENTSLVGVNLKDAILQHSVLNGASIEESILQSSDLRGVSLDSGRVSHSEMNLAILNNAVI
RNSNITKSNMRSASLHGAMLEGVNVSEVDFTSANMKGAKASKSVYSGIIARNTRWAYAQLNDLIIYNSQFDKARFYNSNL
NKVNFFRSDMAGILFSKSAFIGSSIHGNTMSAAKFRDCTFKNTLVVDNGISAPVGAIGSIDALEQLFSSELVFDVNYSYF
DFSGMSLHDIDFSNAVLAGVKFNDAHLSKVNFTGANLSFTDFTDARLEDVNFANANLLGANIAGHDAFEEKDEVPGERDS
LLSR

Sequences:

>Translated_564_residues
MKKTPYTRQDFQDFITKCDAKGIAPNFSKEFGNNFYGADFSELDMRGSIFEDVNLMQASFRHSNISNTVFTNSDMRGTDF
SNTDLNKSRFENVDLKFANLALADLSGVKITSSDIGYSSFIGSDMQMASLDKVTGYGATFSNAELTLVSITESTLRKANF
QDAEASNVVIQNSDLTEVSFFGANLRSARIQQSLLQHSMMYAVNLDFADLTGSDLSFSNLEMASIRSASLYKANLKNVNM
YSADVYYTDLRDADLSRATLENTSLVGVNLKDAILQHSVLNGASIEESILQSSDLRGVSLDSGRVSHSEMNLAILNNAVI
RNSNITKSNMRSASLHGAMLEGVNVSEVDFTSANMKGAKASKSVYSGIIARNTRWAYAQLNDLIIYNSQFDKARFYNSNL
NKVNFFRSDMAGILFSKSAFIGSSIHGNTMSAAKFRDCTFKNTLVVDNGISAPVGAIGSIDALEQLFSSELVFDVNYSYF
DFSGMSLHDIDFSNAVLAGVKFNDAHLSKVNFTGANLSFTDFTDARLEDVNFANANLLGANIAGHDAFEEKDEVPGERDS
LLSR
>Mature_564_residues
MKKTPYTRQDFQDFITKCDAKGIAPNFSKEFGNNFYGADFSELDMRGSIFEDVNLMQASFRHSNISNTVFTNSDMRGTDF
SNTDLNKSRFENVDLKFANLALADLSGVKITSSDIGYSSFIGSDMQMASLDKVTGYGATFSNAELTLVSITESTLRKANF
QDAEASNVVIQNSDLTEVSFFGANLRSARIQQSLLQHSMMYAVNLDFADLTGSDLSFSNLEMASIRSASLYKANLKNVNM
YSADVYYTDLRDADLSRATLENTSLVGVNLKDAILQHSVLNGASIEESILQSSDLRGVSLDSGRVSHSEMNLAILNNAVI
RNSNITKSNMRSASLHGAMLEGVNVSEVDFTSANMKGAKASKSVYSGIIARNTRWAYAQLNDLIIYNSQFDKARFYNSNL
NKVNFFRSDMAGILFSKSAFIGSSIHGNTMSAAKFRDCTFKNTLVVDNGISAPVGAIGSIDALEQLFSSELVFDVNYSYF
DFSGMSLHDIDFSNAVLAGVKFNDAHLSKVNFTGANLSFTDFTDARLEDVNFANANLLGANIAGHDAFEEKDEVPGERDS
LLSR

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Homo sapiens, GI39753959, Length=194, Percent_Identity=25.2577319587629, Blast_Score=68, Evalue=3e-11,
Organism=Escherichia coli, GI1790502, Length=238, Percent_Identity=23.9495798319328, Blast_Score=73, Evalue=5e-14,
Organism=Drosophila melanogaster, GI221377802, Length=190, Percent_Identity=30.5263157894737, Blast_Score=75, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 61795; Mature: 61795

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTPYTRQDFQDFITKCDAKGIAPNFSKEFGNNFYGADFSELDMRGSIFEDVNLMQASF
CCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHHH
RHSNISNTVFTNSDMRGTDFSNTDLNKSRFENVDLKFANLALADLSGVKITSSDIGYSSF
HCCCCCCEEEECCCCCCCCCCCCCCCHHHCCCCCEEEEEEEEECCCCCEEECCCCCHHHH
IGSDMQMASLDKVTGYGATFSNAELTLVSITESTLRKANFQDAEASNVVIQNSDLTEVSF
CCCCCHHHHHHHHCCCCCEECCCEEEEEEECHHHHHHCCCCCCCCCCEEEECCCCCEEEE
FGANLRSARIQQSLLQHSMMYAVNLDFADLTGSDLSFSNLEMASIRSASLYKANLKNVNM
ECCCHHHHHHHHHHHHHHEEEEEECCHHHCCCCCCCCCCCCHHHCCCCCEEEECCCCCEE
YSADVYYTDLRDADLSRATLENTSLVGVNLKDAILQHSVLNGASIEESILQSSDLRGVSL
EEEEEEEECCCCCCCCHHEECCCEEEECCHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEC
DSGRVSHSEMNLAILNNAVIRNSNITKSNMRSASLHGAMLEGVNVSEVDFTSANMKGAKA
CCCCCCCCCCEEEEECCEEEECCCCCHHHCCHHHHCHHHHCCCCCCEEEECCCCCCCCHH
SKSVYSGIIARNTRWAYAQLNDLIIYNSQFDKARFYNSNLNKVNFFRSDMAGILFSKSAF
HHHHHHHHHHCCCEEEEEEECEEEEECCCCCCHHHCCCCCCEEEHHHHHHHHHHEECCHH
IGSSIHGNTMSAAKFRDCTFKNTLVVDNGISAPVGAIGSIDALEQLFSSELVFDVNYSYF
CCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEEECCCEE
DFSGMSLHDIDFSNAVLAGVKFNDAHLSKVNFTGANLSFTDFTDARLEDVNFANANLLGA
ECCCCEEEECCCCCEEEEEEEECCCEEEEEEECCCCEEECCCCCCHHCCCCCCCCEEEEC
NIAGHDAFEEKDEVPGERDSLLSR
CCCCCCCCHHHHCCCCCHHHHHCC
>Mature Secondary Structure
MKKTPYTRQDFQDFITKCDAKGIAPNFSKEFGNNFYGADFSELDMRGSIFEDVNLMQASF
CCCCCCCHHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCHHHHCCCCCHHHHHHHHHHHH
RHSNISNTVFTNSDMRGTDFSNTDLNKSRFENVDLKFANLALADLSGVKITSSDIGYSSF
HCCCCCCEEEECCCCCCCCCCCCCCCHHHCCCCCEEEEEEEEECCCCCEEECCCCCHHHH
IGSDMQMASLDKVTGYGATFSNAELTLVSITESTLRKANFQDAEASNVVIQNSDLTEVSF
CCCCCHHHHHHHHCCCCCEECCCEEEEEEECHHHHHHCCCCCCCCCCEEEECCCCCEEEE
FGANLRSARIQQSLLQHSMMYAVNLDFADLTGSDLSFSNLEMASIRSASLYKANLKNVNM
ECCCHHHHHHHHHHHHHHEEEEEECCHHHCCCCCCCCCCCCHHHCCCCCEEEECCCCCEE
YSADVYYTDLRDADLSRATLENTSLVGVNLKDAILQHSVLNGASIEESILQSSDLRGVSL
EEEEEEEECCCCCCCCHHEECCCEEEECCHHHHHHHHHHCCCCHHHHHHHHCCCCCEEEC
DSGRVSHSEMNLAILNNAVIRNSNITKSNMRSASLHGAMLEGVNVSEVDFTSANMKGAKA
CCCCCCCCCCEEEEECCEEEECCCCCHHHCCHHHHCHHHHCCCCCCEEEECCCCCCCCHH
SKSVYSGIIARNTRWAYAQLNDLIIYNSQFDKARFYNSNLNKVNFFRSDMAGILFSKSAF
HHHHHHHHHHCCCEEEEEEECEEEEECCCCCCHHHCCCCCCEEEHHHHHHHHHHEECCHH
IGSSIHGNTMSAAKFRDCTFKNTLVVDNGISAPVGAIGSIDALEQLFSSELVFDVNYSYF
CCCCCCCCCCCCHHHCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHCCCEEEEECCCEE
DFSGMSLHDIDFSNAVLAGVKFNDAHLSKVNFTGANLSFTDFTDARLEDVNFANANLLGA
ECCCCEEEECCCCCEEEEEEEECCCEEEEEEECCCCEEECCCCCCHHCCCCCCCCEEEEC
NIAGHDAFEEKDEVPGERDSLLSR
CCCCCCCCHHHHCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]