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The map label for this gene is ydbM [H]

Identifier: 88196201

GI number: 88196201

Start: 2350014

End: 2350880

Strand: Reverse

Name: ydbM [H]

Synonym: SAOUHSC_02556

Alternate gene names: 88196201

Gene position: 2350880-2350014 (Counterclockwise)

Preceding gene: 88196202

Following gene: 88196200

Centisome position: 83.32

GC content: 33.79

Gene sequence:

>867_bases
ATGAATGATATGGATAATTCCTTTTTAATAACAACGGAAATTCAAAGAAAATGGATTGAAAAATTCAAAGTAATTAGAGA
TACATTTAAGGCTAAAGCTGAATATAATGATCAACATAGCCAATTTCCATATAAAAATATTGAATGGTTAATTAAAGAAG
GTTATGGAAAATTAACGTTACCAAAAGCATATGGTGGTGAAGGTGCGACCATAGAAGACATGGTTATTTTGCAATCATTT
TTAGGCGAACTTGATGGTGCCACAGCATTATCTATTGGTTGGCATGTGAGTGTCGTAGGACAAATTTATGAACAGAAATT
ATGGTCTCAAGATATGTTGGAGCAATTTGCTGTTGAAATTAATAATGGTGCATTAGTTAATAGAGCAGTTAGTGAAGCTG
AAATGGGTAGTCCAACAAGAGGGGGAAGACCAAGTACACATGCTGTTAAAGCTGATGATGGGTATATTTTAAATGGTGTG
AAGACATATACATCAATGAGTAAAGCACTAACACATATTATTGTTGCTGCTTATATAGAAGAATTAGAAAGTGTTGGTTT
TTTCTTAGTAGACAGGAATTTGCCTGGTGTTGAAATTGCCGATAATTGGGACGTATTAGGTATGCGAGCGACAGAAAGTC
ATGATTTAATATTAAATGATGTAAAAGTACCATTAAAACATTTAGTGGAAACAGAGAAAAGTAAAGCGCCAAATGGTTGG
ATATTGCATATACCAAGCTGTTATTTAGGTATAGCACAAGCTGCTAGAAATTATGCTGTAAACTTTGCAATCCAACATAG
CCCTAATAGTATTGAAGGAACGATTGCAACATTGCCAACTGTGCAACAAAATTTAGGGAAAATGTGA

Upstream 100 bases:

>100_bases
TTTCTTTTAATTGTTCACAGCACGTTCCTTTTTATTTTTAAAGTCGAGTGTTAAACTAGGAATAAATAATTTATATTGTG
TGTTGTGTGGGGTGACTAAT

Downstream 100 bases:

>100_bases
ANACGTCTAGTATGTTATAGTGCTGAGTACAATATTTTATGTGAGTACACGCAAAAGGGTATCAACAATATAAAGATGAC
AGTCAGATAAGAAATCCCAC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 288

Protein sequence:

>288_residues
MNDMDNSFLITTEIQRKWIEKFKVIRDTFKAKAEYNDQHSQFPYKNIEWLIKEGYGKLTLPKAYGGEGATIEDMVILQSF
LGELDGATALSIGWHVSVVGQIYEQKLWSQDMLEQFAVEINNGALVNRAVSEAEMGSPTRGGRPSTHAVKADDGYILNGV
KTYTSMSKALTHIIVAAYIEELESVGFFLVDRNLPGVEIADNWDVLGMRATESHDLILNDVKVPLKHLVETEKSKAPNGW
ILHIPSCYLGIAQAARNYAVNFAIQHSPNSIEGTIATLPTVQQNLGKM

Sequences:

>Translated_288_residues
MNDMDNSFLITTEIQRKWIEKFKVIRDTFKAKAEYNDQHSQFPYKNIEWLIKEGYGKLTLPKAYGGEGATIEDMVILQSF
LGELDGATALSIGWHVSVVGQIYEQKLWSQDMLEQFAVEINNGALVNRAVSEAEMGSPTRGGRPSTHAVKADDGYILNGV
KTYTSMSKALTHIIVAAYIEELESVGFFLVDRNLPGVEIADNWDVLGMRATESHDLILNDVKVPLKHLVETEKSKAPNGW
ILHIPSCYLGIAQAARNYAVNFAIQHSPNSIEGTIATLPTVQQNLGKM
>Mature_288_residues
MNDMDNSFLITTEIQRKWIEKFKVIRDTFKAKAEYNDQHSQFPYKNIEWLIKEGYGKLTLPKAYGGEGATIEDMVILQSF
LGELDGATALSIGWHVSVVGQIYEQKLWSQDMLEQFAVEINNGALVNRAVSEAEMGSPTRGGRPSTHAVKADDGYILNGV
KTYTSMSKALTHIIVAAYIEELESVGFFLVDRNLPGVEIADNWDVLGMRATESHDLILNDVKVPLKHLVETEKSKAPNGW
ILHIPSCYLGIAQAARNYAVNFAIQHSPNSIEGTIATLPTVQQNLGKM

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4501859, Length=238, Percent_Identity=24.7899159663866, Blast_Score=66, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24646207, Length=271, Percent_Identity=27.6752767527675, Blast_Score=79, Evalue=4e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013107
- InterPro:   IPR006092
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF08028 Acyl-CoA_dh_2; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: NA

Molecular weight: Translated: 32029; Mature: 32029

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNDMDNSFLITTEIQRKWIEKFKVIRDTFKAKAEYNDQHSQFPYKNIEWLIKEGYGKLTL
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEC
PKAYGGEGATIEDMVILQSFLGELDGATALSIGWHVSVVGQIYEQKLWSQDMLEQFAVEI
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCHHHHHHHHHHCC
NNGALVNRAVSEAEMGSPTRGGRPSTHAVKADDGYILNGVKTYTSMSKALTHIIVAAYIE
CCCEEHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHH
ELESVGFFLVDRNLPGVEIADNWDVLGMRATESHDLILNDVKVPLKHLVETEKSKAPNGW
HHHHCCEEEEECCCCCCEEECCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCE
ILHIPSCYLGIAQAARNYAVNFAIQHSPNSIEGTIATLPTVQQNLGKM
EEECCHHHHHHHHHHHCEEEEEEEEECCCCCCEEEEECCHHHHHHCCC
>Mature Secondary Structure
MNDMDNSFLITTEIQRKWIEKFKVIRDTFKAKAEYNDQHSQFPYKNIEWLIKEGYGKLTL
CCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCEEC
PKAYGGEGATIEDMVILQSFLGELDGATALSIGWHVSVVGQIYEQKLWSQDMLEQFAVEI
CCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHCHHHHHHHHHHCC
NNGALVNRAVSEAEMGSPTRGGRPSTHAVKADDGYILNGVKTYTSMSKALTHIIVAAYIE
CCCEEHHHHHHHHHCCCCCCCCCCCCCEEECCCCEEECCHHHHHHHHHHHHHHHHHHHHH
ELESVGFFLVDRNLPGVEIADNWDVLGMRATESHDLILNDVKVPLKHLVETEKSKAPNGW
HHHHCCEEEEECCCCCCEEECCCCEEEEEECCCCCEEEHHHHHHHHHHHHHHHCCCCCCE
ILHIPSCYLGIAQAARNYAVNFAIQHSPNSIEGTIATLPTVQQNLGKM
EEECCHHHHHHHHHHHCEEEEEEEEECCCCCCEEEEECCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]