Click here to switch to the map view.

The map label for this gene is ssb [H]

Identifier: 88196000

GI number: 88196000

Start: 2163706

End: 2164101

Strand: Reverse

Name: ssb [H]

Synonym: SAOUHSC_02334

Alternate gene names: 88196000

Gene position: 2164101-2163706 (Counterclockwise)

Preceding gene: 88196002

Following gene: 88195999

Centisome position: 76.7

GC content: 30.3

Gene sequence:

>396_bases
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Upstream 100 bases:

>100_bases
TAACGAGATGCTATAGCTATTAATTATATAAAATTTGCCATTTTGACCATTTTTAAGCTAGTAATTAAGATATAGGCATA
GGAGGTGAATCACACACTAC

Downstream 100 bases:

>100_bases
ATCCAATTATCCTAAACATCCTTAATATACATTTAATCCATCCTAAATTTTTTATAGATCTAATTAACTTGAAATATACT
CACTTAAAAACGACTTACAT

Product: bacteriophage L54a, single-stranded DNA binding protein

Products: NA

Alternate protein names: SSB; Helix-destabilizing protein [H]

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Sequences:

>Translated_131_residues
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI
>Mature_131_residues
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 15042; Mature: 15042

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNI
CCCCEEEEEECCCCHHHHHHCCCEEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHH
EKYTNQGTLVGITGQMRSRKYDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDS
HHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCC
QNIDNHDLLEI
CCCCCCCCCCC
>Mature Secondary Structure
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNI
CCCCEEEEEECCCCHHHHHHCCCEEEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHHHH
EKYTNQGTLVGITGQMRSRKYDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDS
HHHCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHCCCCC
QNIDNHDLLEI
CCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12950922 [H]