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The map label for this gene is sceD [H]

Identifier: 88195999

GI number: 88195999

Start: 2162622

End: 2163317

Strand: Reverse

Name: sceD [H]

Synonym: SAOUHSC_02333

Alternate gene names: 88195999

Gene position: 2163317-2162622 (Counterclockwise)

Preceding gene: 88196000

Following gene: 88195998

Centisome position: 76.68

GC content: 39.08

Gene sequence:

>696_bases
ATGAAGAAAACATTACTCGCATCATCATTAGCAGTAGGTTTAGGAATCGTAGCAGGAAATGCAGGTCACGAAGCCCATGC
AAGTGAAGCGGACTTAAATAAAGCATCTTTAGCGCAAATGGCGCAATCAAATGATCAAACATTAAATCAAAAACCAATTG
AAGCTGGGGCTTATAATTATACATTTGACTATGAAGGGTTTACTTATCACTTTGAATCAGATGGTACACACTTTGCTTGG
AATTACCATGCAACAGGTACTAATGGAGCAGACATGAGTGCACAAGCACCTGCAACTAATAATGTTGCACCATCAGCTGT
TCAAGCTAATCAAGTACAATCACAAGAAGTTGAAGCACCACAAAATGCTCAAACTCAACAACCACAAGCATCAACATCAA
ACAATTCACAAGTTACTGCAACACCAACTGAATCAAAATCATCAGAAGGTTCATCAGTAAATGTGAATGCTCATCTAAAA
CAAATTGCTCAACGTGAATCAGGTGGCAATATTCATGCTGTAAATCCAACATCAGGTGCAGCTGGTAAGTATCAATTCTT
ACAATCAACTTGGGATTCAGTAGCACCTGCTAAATATAAAGGTGTATCACCAGCAAATGCTCCTGAAAGTGTTCAAGATG
CCGCAGCAGTAAAATTATATAACACTGGTGGCGCTGGACATTGGGTTACTGCATAA

Upstream 100 bases:

>100_bases
TTTTTTATTTTGTTGTAACCTGCACGGATTTTATAGATGTTACAGTAGTCTCTGTAAAACTTTTAGAGAAACAAATTACT
TGTAGGAGGATTTTAAGATT

Downstream 100 bases:

>100_bases
GCCATTTATGCATAGCTAATTAATAGTTATATAAGTAACTTTTAGATTGGAATATATCGGGGAATTCTCGATATGTTCCG
GTTTTTTTATTTCGCAAATA

Product: sceD protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 231; Mature: 231

Protein sequence:

>231_residues
MKKTLLASSLAVGLGIVAGNAGHEAHASEADLNKASLAQMAQSNDQTLNQKPIEAGAYNYTFDYEGFTYHFESDGTHFAW
NYHATGTNGADMSAQAPATNNVAPSAVQANQVQSQEVEAPQNAQTQQPQASTSNNSQVTATPTESKSSEGSSVNVNAHLK
QIAQRESGGNIHAVNPTSGAAGKYQFLQSTWDSVAPAKYKGVSPANAPESVQDAAAVKLYNTGGAGHWVTA

Sequences:

>Translated_231_residues
MKKTLLASSLAVGLGIVAGNAGHEAHASEADLNKASLAQMAQSNDQTLNQKPIEAGAYNYTFDYEGFTYHFESDGTHFAW
NYHATGTNGADMSAQAPATNNVAPSAVQANQVQSQEVEAPQNAQTQQPQASTSNNSQVTATPTESKSSEGSSVNVNAHLK
QIAQRESGGNIHAVNPTSGAAGKYQFLQSTWDSVAPAKYKGVSPANAPESVQDAAAVKLYNTGGAGHWVTA
>Mature_231_residues
MKKTLLASSLAVGLGIVAGNAGHEAHASEADLNKASLAQMAQSNDQTLNQKPIEAGAYNYTFDYEGFTYHFESDGTHFAW
NYHATGTNGADMSAQAPATNNVAPSAVQANQVQSQEVEAPQNAQTQQPQASTSNNSQVTATPTESKSSEGSSVNVNAHLK
QIAQRESGGNIHAVNPTSGAAGKYQFLQSTWDSVAPAKYKGVSPANAPESVQDAAAVKLYNTGGAGHWVTA

Specific function: Is able to cleave peptidoglycan and affects clumping and separation of bacterial cells [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase family. SceD subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010618 [H]

Pfam domain/function: PF06737 Transglycosylas [H]

EC number: NA

Molecular weight: Translated: 24066; Mature: 24066

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTLLASSLAVGLGIVAGNAGHEAHASEADLNKASLAQMAQSNDQTLNQKPIEAGAYNY
CCCHHHHHHHHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEE
TFDYEGFTYHFESDGTHFAWNYHATGTNGADMSAQAPATNNVAPSAVQANQVQSQEVEAP
EEECCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
QNAQTQQPQASTSNNSQVTATPTESKSSEGSSVNVNAHLKQIAQRESGGNIHAVNPTSGA
CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHHCCCCCEEEECCCCCC
AGKYQFLQSTWDSVAPAKYKGVSPANAPESVQDAAAVKLYNTGGAGHWVTA
CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCEEEEEEECCCCCCCCCC
>Mature Secondary Structure
MKKTLLASSLAVGLGIVAGNAGHEAHASEADLNKASLAQMAQSNDQTLNQKPIEAGAYNY
CCCHHHHHHHHHHEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEE
TFDYEGFTYHFESDGTHFAWNYHATGTNGADMSAQAPATNNVAPSAVQANQVQSQEVEAP
EEECCCEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC
QNAQTQQPQASTSNNSQVTATPTESKSSEGSSVNVNAHLKQIAQRESGGNIHAVNPTSGA
CCCCCCCCCCCCCCCCEEEECCCCCCCCCCCEEEEHHHHHHHHHHCCCCCEEEECCCCCC
AGKYQFLQSTWDSVAPAKYKGVSPANAPESVQDAAAVKLYNTGGAGHWVTA
CCHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA