| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is ygjT [C]
Identifier: 87201211
GI number: 87201211
Start: 3415696
End: 3416685
Strand: Direct
Name: ygjT [C]
Synonym: Saro_3199
Alternate gene names: 87201211
Gene position: 3415696-3416685 (Clockwise)
Preceding gene: 87201210
Following gene: 87201216
Centisome position: 95.9
GC content: 60.61
Gene sequence:
>990_bases ATGGAATTCCTCTTCACAGATTGGCTCGGCACGCCCGCGTGGTTCTGGCTAGCCTTCCTCGGCCTGGTCGTGGTGCTGAC CGCATTCGACCTTGGCGTCCTCCACAAGGAGGACAAGGCCATGGGCATCGGCGAATCGCTGAAGCTTACGGCGTTCTACA TCACCATTGCCCTGGCATTCGGCGCCTGGGTCTGGGTGGAGAAGGGCGCGGACCTCGGCATGAAGTACTATACCGGGTTC TTCATCGAGAAAGCGCTGTCGATCGACAATGTCTTCGTCATCAGCCTGATCTTCACCTTCTTCGCCATTCCGGCACGGTT TCAGTACCGGGCACTGCTGTGGGGCATCGTCGCGGTCATCTTCCTGCGCGGCGCGATGATCGCCGGCGGCGCGGCGCTGG TAGAGCAGGCCTACTGGGTGCTCTACATCTTCGCGGCGTTCCTGGTGTTCACCGGTATCAAGATGTTCTTCACTTCCGAC CACGATCCTGACATCGGCAACAATCCGGTCGTCCGCTGGATCAGCCGTCACATGCGCGTGACCAAGGAACTGCACGACCA GCACTTCTTCGTGAAGGTCCCGGACGGGAAGACCGGCAAGATGGTCAATGCAGCGACGCCGCTGTTCCTTGCGCTGGTCG TCATCAACCTTGCCGACCTGGTGTTCGCGGTGGACTCGGTCCCGGCGATCTTCGCGATCACGACCGACACCTTCGTGGTT TACACGTCGAACATCATGGCGATCCTCGGCCTGCGCGCACTCTATTTCGCGCTGGCGGCGATGATCGATCGCTTCGCCTA CCTCAAGTATGCGCTAGCGGCGGTGCTGGTGTTCATCGGCTCCAAGATCTTCGTCTCGGACTTCATCCTGGGCGGCGACA AGTTCCCGCCGGTGATGAGCCTTGCCGTTACCATGGCGATCATTGCCGGCGGCGTGGTGTTCTCGCTCTACAAGACGCGG GGACACGAAGGCACGAAGCCCGCGGTTTGA
Upstream 100 bases:
>100_bases TGGCGCGCCTGCTTTCGCGCCGTTCGGCAACAATCTGAAATAGAGGAACGCTCCCCGCGCCCCGTGCATTTCGGGGCGCG GCGGGCACTGGAGATACCGA
Downstream 100 bases:
>100_bases TTTATCCCCCCCTCCCGCGCAAGGGAGGGGGCTTCCATTCAGGCTACCACTGCCGGATCTCTTCAAGGAAACGGTCGCCG TAGGCGTCGAGCTTGCGGGT
Product: integral membrane protein TerC
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 329; Mature: 329
Protein sequence:
>329_residues MEFLFTDWLGTPAWFWLAFLGLVVVLTAFDLGVLHKEDKAMGIGESLKLTAFYITIALAFGAWVWVEKGADLGMKYYTGF FIEKALSIDNVFVISLIFTFFAIPARFQYRALLWGIVAVIFLRGAMIAGGAALVEQAYWVLYIFAAFLVFTGIKMFFTSD HDPDIGNNPVVRWISRHMRVTKELHDQHFFVKVPDGKTGKMVNAATPLFLALVVINLADLVFAVDSVPAIFAITTDTFVV YTSNIMAILGLRALYFALAAMIDRFAYLKYALAAVLVFIGSKIFVSDFILGGDKFPPVMSLAVTMAIIAGGVVFSLYKTR GHEGTKPAV
Sequences:
>Translated_329_residues MEFLFTDWLGTPAWFWLAFLGLVVVLTAFDLGVLHKEDKAMGIGESLKLTAFYITIALAFGAWVWVEKGADLGMKYYTGF FIEKALSIDNVFVISLIFTFFAIPARFQYRALLWGIVAVIFLRGAMIAGGAALVEQAYWVLYIFAAFLVFTGIKMFFTSD HDPDIGNNPVVRWISRHMRVTKELHDQHFFVKVPDGKTGKMVNAATPLFLALVVINLADLVFAVDSVPAIFAITTDTFVV YTSNIMAILGLRALYFALAAMIDRFAYLKYALAAVLVFIGSKIFVSDFILGGDKFPPVMSLAVTMAIIAGGVVFSLYKTR GHEGTKPAV >Mature_329_residues MEFLFTDWLGTPAWFWLAFLGLVVVLTAFDLGVLHKEDKAMGIGESLKLTAFYITIALAFGAWVWVEKGADLGMKYYTGF FIEKALSIDNVFVISLIFTFFAIPARFQYRALLWGIVAVIFLRGAMIAGGAALVEQAYWVLYIFAAFLVFTGIKMFFTSD HDPDIGNNPVVRWISRHMRVTKELHDQHFFVKVPDGKTGKMVNAATPLFLALVVINLADLVFAVDSVPAIFAITTDTFVV YTSNIMAILGLRALYFALAAMIDRFAYLKYALAAVLVFIGSKIFVSDFILGGDKFPPVMSLAVTMAIIAGGVVFSLYKTR GHEGTKPAV
Specific function: Unknown
COG id: COG0861
COG function: function code P; Membrane protein TerC, possibly involved in tellurium resistance
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the terC family [H]
Homologues:
Organism=Escherichia coli, GI48994922, Length=327, Percent_Identity=40.3669724770642, Blast_Score=230, Evalue=1e-61,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005496 - InterPro: IPR022369 [H]
Pfam domain/function: PF03741 TerC [H]
EC number: NA
Molecular weight: Translated: 36403; Mature: 36403
Theoretical pI: Translated: 8.66; Mature: 8.66
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEFLFTDWLGTPAWFWLAFLGLVVVLTAFDLGVLHKEDKAMGIGESLKLTAFYITIALAF CCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH GAWVWVEKGADLGMKYYTGFFIEKALSIDNVFVISLIFTFFAIPARFQYRALLWGIVAVI HHHHEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH FLRGAMIAGGAALVEQAYWVLYIFAAFLVFTGIKMFFTSDHDPDIGNNPVVRWISRHMRV HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHH TKELHDQHFFVKVPDGKTGKMVNAATPLFLALVVINLADLVFAVDSVPAIFAITTDTFVV HHHHCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEE YTSNIMAILGLRALYFALAAMIDRFAYLKYALAAVLVFIGSKIFVSDFILGGDKFPPVMS EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHH LAVTMAIIAGGVVFSLYKTRGHEGTKPAV HHHHHHHHHHHHHHHHHHHCCCCCCCCCC >Mature Secondary Structure MEFLFTDWLGTPAWFWLAFLGLVVVLTAFDLGVLHKEDKAMGIGESLKLTAFYITIALAF CCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHH GAWVWVEKGADLGMKYYTGFFIEKALSIDNVFVISLIFTFFAIPARFQYRALLWGIVAVI HHHHEEECCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH FLRGAMIAGGAALVEQAYWVLYIFAAFLVFTGIKMFFTSDHDPDIGNNPVVRWISRHMRV HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHH TKELHDQHFFVKVPDGKTGKMVNAATPLFLALVVINLADLVFAVDSVPAIFAITTDTFVV HHHHCCCEEEEECCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCEEEE YTSNIMAILGLRALYFALAAMIDRFAYLKYALAAVLVFIGSKIFVSDFILGGDKFPPVMS EHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCCHHHH LAVTMAIIAGGVVFSLYKTRGHEGTKPAV HHHHHHHHHHHHHHHHHHHCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11557893 [H]