| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
Click here to switch to the map view.
The map label for this gene is ymgE [C]
Identifier: 87201197
GI number: 87201197
Start: 3406716
End: 3406982
Strand: Direct
Name: ymgE [C]
Synonym: Saro_3185
Alternate gene names: 87201197
Gene position: 3406716-3406982 (Clockwise)
Preceding gene: 87201196
Following gene: 87201198
Centisome position: 95.65
GC content: 64.79
Gene sequence:
>267_bases ATGGGCCTTATCATTCTTCTCATCGTCGGCGGCATCCTCGGCTGGCTGGCCAGCATCGTGATGCGCACCGACGCCCAGCA GGGCATCTTCCTCAACATCGTCGTCGGCATCGTCGGCGCACTGCTTGGCGGCTTCCTGCTTGCTCCGCTGATCGGCGGCG GCAGCATCACCAGCGGCGTTTCGGCCGGTACGCTGATCGTGTCGTTCCTCGGCGCGCTCATCCTGCTCGCCATCGTGAAC CTCGTCCGTCGCGGTTCGGTTCGCTGA
Upstream 100 bases:
>100_bases CTGACCGAAACAGGCCCCTTTCATCGACCCGCCGCATCTGCGGAACCAAGTGCCCCGTCCGGGATTGACCGAACAGACAG CACTTCAAGGGGTTACTGAA
Downstream 100 bases:
>100_bases GCTTCTTTCCAAAATCCATGACCTACCAACAGAGGGCGGCCCGCAAGGACCGCCCTCACCTTGACCAGAAGGGGACTGCC ATGAAGGGAATTTTCAAGGG
Product: transglycosylase-associated protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 88; Mature: 87
Protein sequence:
>88_residues MGLIILLIVGGILGWLASIVMRTDAQQGIFLNIVVGIVGALLGGFLLAPLIGGGSITSGVSAGTLIVSFLGALILLAIVN LVRRGSVR
Sequences:
>Translated_88_residues MGLIILLIVGGILGWLASIVMRTDAQQGIFLNIVVGIVGALLGGFLLAPLIGGGSITSGVSAGTLIVSFLGALILLAIVN LVRRGSVR >Mature_87_residues GLIILLIVGGILGWLASIVMRTDAQQGIFLNIVVGIVGALLGGFLLAPLIGGGSITSGVSAGTLIVSFLGALILLAIVNL VRRGSVR
Specific function: Unknown
COG id: COG2261
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8852; Mature: 8721
Theoretical pI: Translated: 12.50; Mature: 12.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGLIILLIVGGILGWLASIVMRTDAQQGIFLNIVVGIVGALLGGFLLAPLIGGGSITSGV CHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCH SAGTLIVSFLGALILLAIVNLVRRGSVR HHHHHHHHHHHHHHHHHHHHHHHHCCCC >Mature Secondary Structure GLIILLIVGGILGWLASIVMRTDAQQGIFLNIVVGIVGALLGGFLLAPLIGGGSITSGV HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCH SAGTLIVSFLGALILLAIVNLVRRGSVR HHHHHHHHHHHHHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA