| Definition | Novosphingobium aromaticivorans DSM 12444 chromosome, complete genome. |
|---|---|
| Accession | NC_007794 |
| Length | 3,561,584 |
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The map label for this gene is 87201070
Identifier: 87201070
GI number: 87201070
Start: 3274468
End: 3275265
Strand: Reverse
Name: 87201070
Synonym: Saro_3058
Alternate gene names: NA
Gene position: 3275265-3274468 (Counterclockwise)
Preceding gene: 87201071
Following gene: 87201068
Centisome position: 91.96
GC content: 72.43
Gene sequence:
>798_bases ATGCTGGCCAGATCCTCCCAGAGGGGAAACGCGATGCATACCGTCCGCAATCGAATGGCCAATCGTCCGCCCGCCCGGTC AAAGGGCAAGCGCCCCAATCCCCGCGCGCCGGCCGTCTCCCCGCCGCCGTTCGTGCTCAGGGCGTCCGATCCGCCGAGCT TCCCTCCCGGCCTGATCGTCCCTGCGCCGCGTGGCGCAATCATCGCGACCCTGCCCTGGCCGGAAGCCGTCGCCTCTCCC GCGTTACCCGAACCGCCGGCCCCGTCGCCCCCGAAGCGCGCCAAGCCGCGCCGCAAGCCTGTCGCAAAGCCCGGGCGCAA GCGGGCAAGATCCTCGTCCCCAAAGCGTGCCGCAGCGCCGCCCCGGCGCCGGGCAAGGGCCGCCAAGGTCGCCGCGGCGC AACCCCCGTCCGTGCCGAAGCCCGCTATCGATGCCGCCACCACCGATGCGCTTCTCGACCGCGCATTGTCGATGAAAGCC GAACCGATGCCGCAGCCCAACTCGCCCGAGCCCACCGCTCTTCCCCCCGCCGCTCTATCCAGTGCCGAAGTGTGCCCGGA TCAGCCGCTTTCGCGCTCGCGGTCGCTCGCGCTTCCTCCGCCCCGCAGCCTTGGTGAGGCGATCGGGCGGTGGCTGCGCG ACGCGGGTCGCTGGATCGCGCGGCTGAGCGCGCGTCGGCGTCAGTCTCCGGCGGAAAGGGCCATGCTCGCCCGGGCAAGC GCGCGGCACATGGCCATCCAGTCGCAGCTCGCCGCCGATGCCACCCGGGTTCCGCCGGTCATTCGCCCCAGCGTTTGA
Upstream 100 bases:
>100_bases TGCCGTTGGAGAGATCGCCCTTCGACCATCGCGCGGAGGAAAAGCTCCTCCAAAGCCGATCCGGTTCGCGATTCGCAGTT TCGGTTCGCTGTGACATCAA
Downstream 100 bases:
>100_bases GACGCGGCGTGGGTACTGCAACGCTGCGCGCCCGTTCGTAGGCCGCACCTGCCTTCAGCACCCGCGCGTCGTCCCACTTC GCCCCCATGATCGAAAGGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 265; Mature: 265
Protein sequence:
>265_residues MLARSSQRGNAMHTVRNRMANRPPARSKGKRPNPRAPAVSPPPFVLRASDPPSFPPGLIVPAPRGAIIATLPWPEAVASP ALPEPPAPSPPKRAKPRRKPVAKPGRKRARSSSPKRAAAPPRRRARAAKVAAAQPPSVPKPAIDAATTDALLDRALSMKA EPMPQPNSPEPTALPPAALSSAEVCPDQPLSRSRSLALPPPRSLGEAIGRWLRDAGRWIARLSARRRQSPAERAMLARAS ARHMAIQSQLAADATRVPPVIRPSV
Sequences:
>Translated_265_residues MLARSSQRGNAMHTVRNRMANRPPARSKGKRPNPRAPAVSPPPFVLRASDPPSFPPGLIVPAPRGAIIATLPWPEAVASP ALPEPPAPSPPKRAKPRRKPVAKPGRKRARSSSPKRAAAPPRRRARAAKVAAAQPPSVPKPAIDAATTDALLDRALSMKA EPMPQPNSPEPTALPPAALSSAEVCPDQPLSRSRSLALPPPRSLGEAIGRWLRDAGRWIARLSARRRQSPAERAMLARAS ARHMAIQSQLAADATRVPPVIRPSV >Mature_265_residues MLARSSQRGNAMHTVRNRMANRPPARSKGKRPNPRAPAVSPPPFVLRASDPPSFPPGLIVPAPRGAIIATLPWPEAVASP ALPEPPAPSPPKRAKPRRKPVAKPGRKRARSSSPKRAAAPPRRRARAAKVAAAQPPSVPKPAIDAATTDALLDRALSMKA EPMPQPNSPEPTALPPAALSSAEVCPDQPLSRSRSLALPPPRSLGEAIGRWLRDAGRWIARLSARRRQSPAERAMLARAS ARHMAIQSQLAADATRVPPVIRPSV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 28217; Mature: 28217
Theoretical pI: Translated: 12.63; Mature: 12.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLARSSQRGNAMHTVRNRMANRPPARSKGKRPNPRAPAVSPPPFVLRASDPPSFPPGLIV CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEE PAPRGAIIATLPWPEAVASPALPEPPAPSPPKRAKPRRKPVAKPGRKRARSSSPKRAAAP ECCCCCEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCC PRRRARAAKVAAAQPPSVPKPAIDAATTDALLDRALSMKAEPMPQPNSPEPTALPPAALS HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHC SAEVCPDQPLSRSRSLALPPPRSLGEAIGRWLRDAGRWIARLSARRRQSPAERAMLARAS CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH ARHMAIQSQLAADATRVPPVIRPSV HHHHHHHHHHHHHHHHCCCCCCCCC >Mature Secondary Structure MLARSSQRGNAMHTVRNRMANRPPARSKGKRPNPRAPAVSPPPFVLRASDPPSFPPGLIV CCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCEEE PAPRGAIIATLPWPEAVASPALPEPPAPSPPKRAKPRRKPVAKPGRKRARSSSPKRAAAP ECCCCCEEEECCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCC PRRRARAAKVAAAQPPSVPKPAIDAATTDALLDRALSMKAEPMPQPNSPEPTALPPAALS HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHC SAEVCPDQPLSRSRSLALPPPRSLGEAIGRWLRDAGRWIARLSARRRQSPAERAMLARAS CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH ARHMAIQSQLAADATRVPPVIRPSV HHHHHHHHHHHHHHHHCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA